Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H05
         (873 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p pro...   109   5e-24
AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase ...   106   3e-23
AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA...   106   3e-23

>AF160895-1|AAD46835.1|  533|Drosophila melanogaster GM13640p
           protein.
          Length = 533

 Score =  109 bits (262), Expect = 5e-24
 Identities = 51/115 (44%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
 Frame = +3

Query: 438 LKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFA 617
           L+ Y +LC   G    +AD + RR+D+++HFILRLAYCR+E+L RWF+ARE+ELF+ +FA
Sbjct: 86  LRSYLRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRFKFA 145

Query: 618 VMRGEAVEVFFKLNNLCYTTISEDEKNEVIQNLIEST---PYSKIDNMKFYKXXF 773
            + G  V+ F + N      ++E +K+EV   L EST     +KI+ + FYK  F
Sbjct: 146 ALSGFEVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLDFYKVPF 200



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%)
 Frame = +2

Query: 248 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 427
           YPH++ LY  PP E++ + EFE LALER+                  S+E+ E V  DL 
Sbjct: 24  YPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVL-SDEWKEIVSADLT 82

Query: 428 AQG 436
            +G
Sbjct: 83  REG 85


>AF291873-1|AAG01548.1|  533|Drosophila melanogaster DNA primase
           protein.
          Length = 533

 Score =  106 bits (255), Expect = 3e-23
 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
 Frame = +3

Query: 438 LKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFA 617
           L+ Y +LC   G    +AD + RR+D+++HFILRLAYCR+E+L RWF+ARE+ELF+ +FA
Sbjct: 86  LRSYLRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFA 145

Query: 618 VMRGEAVEVFFKLNNLCYTTISEDEKNEVIQNLIEST---PYSKIDNMKFYKXXF 773
            +    V+ F + N      ++E +K+EV   L EST     +KI+ + FYK  F
Sbjct: 146 ALSSFEVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLDFYKVPF 200



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%)
 Frame = +2

Query: 248 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 427
           YPH++ LY  PP E++ + EFE LALER+                  S+E+ E V  DL 
Sbjct: 24  YPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVL-SDEWKEIVSADLT 82

Query: 428 AQG 436
            +G
Sbjct: 83  REG 85


>AE014296-3340|AAF51580.2|  533|Drosophila melanogaster CG5553-PA
           protein.
          Length = 533

 Score =  106 bits (255), Expect = 3e-23
 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
 Frame = +3

Query: 438 LKYYAKLCEKSGCGSTKADFEARRKDHIAHFILRLAYCRTEELRRWFIARELELFKMRFA 617
           L+ Y +LC   G    +AD + RR+D+++HFILRLAYCR+E+L RWF+ARE+ELF+ +FA
Sbjct: 86  LRSYLRLCSTGGSAKHEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFA 145

Query: 618 VMRGEAVEVFFKLNNLCYTTISEDEKNEVIQNLIEST---PYSKIDNMKFYKXXF 773
            +    V+ F + N      ++E +K+EV   L EST     +KI+ + FYK  F
Sbjct: 146 ALSSFEVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLDFYKVPF 200



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 23/63 (36%), Positives = 32/63 (50%)
 Frame = +2

Query: 248 YPHDLQLYKIPPVENITLQEFETLALERVNXXXXXXXXXXXXXXXXNSEEFVEFVLNDLR 427
           YPH++ LY  PP E++ + EFE LALER+                  S+E+ E V  DL 
Sbjct: 24  YPHNVMLYHYPPTEDVHIDEFEELALERLRLLRVLDRASTRNLRVL-SDEWKEIVSADLT 82

Query: 428 AQG 436
            +G
Sbjct: 83  REG 85


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,001,313
Number of Sequences: 53049
Number of extensions: 489831
Number of successful extensions: 1437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)