Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H04
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 47 3e-06
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 29 0.67
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 29 0.89
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 28 1.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 3.6
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 27 3.6
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 27 4.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 4.8
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 26 6.3
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 47.2 bits (107), Expect = 3e-06
Identities = 39/121 (32%), Positives = 61/121 (50%)
Frame = +3
Query: 282 ADILDILDIEQPATEISRDSIIHGDKNKKKYVTAKAVKRPEGMHREVFALLYNDNKELPP 461
ADI D+ ++ P EI G+K K K T + RPEG+ RE+++LL ++ L
Sbjct: 4 ADIRDVFELPPP--EI-------GNKQKSKTPTER---RPEGISRELYSLLGENSAPLAI 51
Query: 462 LLPTDTGKAYKQTKARLGMRKVRKWVWAPFTNPARKDNAVFHHWKRASDEAKEYPFAQFN 641
K +K+ K ++ K + WV PF+ +RKD+ HHW S+ E + +N
Sbjct: 52 YQ-----KKFKE-KPKVS-HKAKNWVRQPFSISSRKDDFTLHHWVLKSEVDSE-AYEDWN 103
Query: 642 K 644
K
Sbjct: 104 K 104
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 700 EDWSQAETDHLMDLCQRXXWEFMVIHDRWDRAAF 801
EDW++ ETD+L LC+ F VI DR+D +
Sbjct: 100 EDWNKDETDYLFRLCKDYDLRFFVIADRYDNEKY 133
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 29.5 bits (63), Expect = 0.67
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 553 LILHV-KTMQFSTTGRGHLMKLKNTPLHNSISKCQYHLIPXSEYNQ----YLKSEDWSQA 717
++ HV K R +KL+++PL+NS + C Y L EY Q Y K+ + Q
Sbjct: 30 IVYHVAKPSHDDKIPREIFLKLQDSPLYNSTTPCIYALDSLLEYQQNEEAYEKNFQFIQK 89
Query: 718 ETDHLMDLCQ 747
D L+ + +
Sbjct: 90 LIDDLLHVIE 99
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 29.1 bits (62), Expect = 0.89
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 231 KNCKTADSINKLFDTKMADILDILDIEQPATEISRDSIIHGDKNKKKYVTAKAVKRPEGM 410
++C + D N D+K + + ++ + D+I+ D+N+K+ + V P G+
Sbjct: 48 ESCLSGDESN---DSKKSSASFYMKLKYGSYRALADNILSTDENRKEDIAVFDVPLPNGL 104
Query: 411 HREVFAL-LYNDNK 449
+ F L LY +K
Sbjct: 105 QIDTFTLCLYRKSK 118
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 40 LRFGL*LVTPKISMNLTNLS*INKKTFSEHDDNTNSINIKIRKTKVLHDTKL 195
+RF + PK +NL N I K S+H S+N+K + H K+
Sbjct: 738 VRFFMDSALPKSKINLNNSKGIWSKDASKHHREIISLNVKQKMDPYKHQNKV 789
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 336 DSIIHGDKNKKKYVTAKAVKRPEGMHREVFALLYNDNKELPPLLPTD 476
+S + + K Y T ++ P G +R L+ +K LP LP D
Sbjct: 94 NSFLPFNNPKDDYKTRITLRSPSGSYRGSVVCLFKRSKFLPEELPAD 140
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 213 YNLLFEKNCKTADSINKLFDTKMADILDILDIEQP 317
Y+L+F++ +DS NK+ T + IL+ +++ P
Sbjct: 395 YDLMFKRVGLPSDSSNKILITDLLQILEDYELDMP 429
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 616 KNTPLHNSISKCQYHLIPXSEYNQYLKSEDWSQAETDHLMDLCQRXXWEFMVIHDRWD 789
KNT +H S Y++ + +N SE+ S DH ++ + +E V +D+ D
Sbjct: 25 KNTGVHFSELLIPYNVFKKAGFNVQFVSENGSYKFDDHSIEESKLGDFERKVFNDKND 82
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 4.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 201 YQLQYNLLFEKNCKTADSINKLFDTKMA-DILDILDIEQPATEISRDSIIHGDKNKKKYV 377
Y++QY+ L KNC + +I K D A +IL + E D+I N + +
Sbjct: 631 YEMQYSSLSIKNCDSDKAIRKDLDRTFAPEILSHFFSNRQQLE-PTDNIAESTANLHRVL 689
Query: 378 TAKAVKRPE 404
+ A+ P+
Sbjct: 690 RSLAIVLPQ 698
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 640 ISKCQYHLIPXSEYNQYLKSEDWSQAETDHLMDLC 744
+S Y+L+ Q +S++ S+ DHL D+C
Sbjct: 261 VSPSSYNLVMDVHRYQLYESDECSKTLDDHLSDVC 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,348
Number of Sequences: 5004
Number of extensions: 64815
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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