Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H04
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0244 + 26643193-26643306,26643398-26643493,26643819-266438...    63   3e-10
08_02_0794 + 21265399-21265683,21266047-21266160,21266861-212671...    32   0.71 
02_05_0380 + 28472494-28473090                                         31   0.94 
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574...    30   2.9  

>05_06_0244 +
           26643193-26643306,26643398-26643493,26643819-26643884,
           26643965-26644024,26644108-26644164,26644464-26644593,
           26645114-26645181,26645276-26645368,26645473-26645520,
           26645882-26646019,26646738-26646833,26647979-26648050,
           26648928-26648982,26649078-26649112,26649808-26649963
          Length = 427

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
 Frame = +3

Query: 357 KNKKKYVTAKAVKRPEGMHREVFALLYNDNKELPPLLPTDTGKAYKQTKARLGMRKVRKW 536
           + KK     +  ++P+G+ REV+AL       + PL+PT      K+  A +   K+  W
Sbjct: 18  QEKKPRAPKEPQRKPDGVSREVYAL--TGGVGMAPLMPTIEASHLKRRPA-VEKEKIA-W 73

Query: 537 VWAPFTNPARKDNAVFHHWKRASDEAK---EYPFAQFNKQVSIPSYSE 671
            W PFT+ AR DN   +HW R  + A    +Y FA++NK+  +  Y++
Sbjct: 74  QWLPFTSSARTDNLQLYHWVRVVNGAPPTGDYHFAKYNKKADVLKYTD 121



 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +1

Query: 676 EYNQYLKSEDWSQAETDHLMDLCQRXXWEFMVIHDRW 786
           EY +YL    WS+ ETD L +LC+R    F+VI DR+
Sbjct: 123 EYEKYLTDPAWSREETDKLFELCERFDLRFIVIVDRF 159


>08_02_0794 +
           21265399-21265683,21266047-21266160,21266861-21267126,
           21267336-21267834
          Length = 387

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 373 MLPLKLSRGPRECIGRFSHYFIMTIRNYLLYCLLIREK 486
           ++ L+L  GPR  + RFSHYF     +Y  YCL++ ++
Sbjct: 234 VVKLRLLPGPRPAMWRFSHYFHFKWSSY-DYCLVLDQR 270


>02_05_0380 + 28472494-28473090
          Length = 198

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 513 GMRKVRKWVWAPFTNPARKD 572
           G RK R W W PF  PA KD
Sbjct: 113 GRRKARVWGWPPFWKPAAKD 132


>07_03_0542 -
           19256688-19256804,19257181-19257255,19257337-19257426,
           19257506-19257568,19257659-19257856,19257973-19258074,
           19259276-19259424,19260136-19260205,19260460-19260582,
           19261541-19261600
          Length = 348

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 261 KLFDTKMADILDILDIEQPATEISRDS---IIHGDK--NKKKYVTAKAVKRPEGMHREVF 425
           KLF  ++A ILD ++ E  + +  R+S    IH  K   K +Y  A+AV    G   +  
Sbjct: 239 KLFHLRLAAILDDVEAEMSSEKQKRESAPPTIHSHKRAEKAQYFLAEAVHNFNGTTEKEL 298

Query: 426 ALLYND 443
           +L+  D
Sbjct: 299 SLIVGD 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,086,281
Number of Sequences: 37544
Number of extensions: 371477
Number of successful extensions: 811
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)