Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_H03
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 32 0.13
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 31 0.22
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 29 0.68
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 29 1.2
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 28 1.6
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 28 1.6
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 28 1.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 2.1
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 28 2.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.7
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 27 2.7
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 27 3.6
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 8.4
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 31.9 bits (69), Expect = 0.13
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = +1
Query: 97 KMLHSSIMLLLLCVSISTSAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDT 276
KM+H + C+ + P+DS I+ + +F Q N P+ P T
Sbjct: 146 KMMHRLVQYFAFCIDHFCTGPSDSRIQEKIRLFIQSAHNIAKHPSLYDTEVRNPSAAEST 205
Query: 277 NS------GNFISNKLQSSTKFI 327
NS NF S+ ++S+KF+
Sbjct: 206 NSHVSLDASNF-SSYAENSSKFL 227
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 31.1 bits (67), Expect = 0.22
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 190 VFDQPQTNFDIQPNTVIEAENYPGGEPDTNSG-NFISNKLQSSTKFISNK 336
VFDQ T+ + P + + E+ P G SG + IS K +S K +S K
Sbjct: 548 VFDQDDTDLEPVPRLMSKVESIPAGASSDKSGKSSISKKSSNSFKELSPK 597
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 29.5 bits (63), Expect = 0.68
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 199 QPQ-TNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKF 324
QPQ D P+ + N PGGEP+ S N S ++ SS+ +
Sbjct: 217 QPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSSAY 259
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +1
Query: 187 PVFDQPQTNFDIQPNTVIEAE-NYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALN 363
P+ D Q + D+ I+A+ N + + K+ S+ + I AL
Sbjct: 153 PLLDN-QPSSDLSNFNTIDADYNNASASTSAPATSASLKKVLSAEDSVRETITDIETALQ 211
Query: 364 FGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNV 471
ASRT S +P E + +L+V E IQNV
Sbjct: 212 NMSTSASRTPNDSSPLPYIENRPASSLAVSEKIQNV 247
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/119 (18%), Positives = 45/119 (37%)
Frame = +1
Query: 151 SAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFIS 330
+APA P V+L + PQ N + +++ N P G + S + + + +
Sbjct: 520 AAPAPVPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKSVPPTNMATERGVVG 579
Query: 331 NKIETQVKALNFGGPFASRTSTLESAVPETEGFGSKTLSVKENIQNVVAGIFQPKPIVD 507
+ + A+N + + K +S+KE + ++ KP V+
Sbjct: 580 RRASMSI-AVNARRVSKPEKEHTNPNAEQGDVIPEKPMSIKERMNMLMTKTDYEKPKVE 637
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +1
Query: 430 GSKTLSVKENIQNVVAGIFQPKPIVDTISESEKYGNTGDKFYSAGKVIVGGAEGVSNVVN 609
GS V + ++A I + + + T+S + Y N GD +S + + +G ++N
Sbjct: 245 GSTEYGVAAGLVRILAAIIRDENALLTVSGLDSYSNIGDVCFSMPRKL--NKDGAHRIIN 302
Query: 610 SVL 618
+ L
Sbjct: 303 AKL 305
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 229 NTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKALN 363
+++ EAENY GG + F + K++ +F++N I+ VK N
Sbjct: 88 SSISEAENYTGGR--LSFMIFETAKIEDCIQFMANLIDNHVKNCN 130
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 151 SAPADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYP 258
SAPA S LP + QP +QP+ ++ ++N P
Sbjct: 449 SAPALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAP 484
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 160 ADSPIRVDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISN-KLQSSTKFISNK 336
A+SP ++LPV + +I PN + ++ P + TN N S + + F SN
Sbjct: 517 ANSPTNLNLPVSSDLDSVLNIPPNEDVFPDSNPVFDEFTNISNLTSPIEASNGNTFGSNP 576
Query: 337 IE--TQVKALN 363
+ Q K++N
Sbjct: 577 VSLPNQQKSVN 587
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -1
Query: 608 LTTLDTPSAPPTMTLPAL*NLSPVLPYFSDSLI--VSTMGLG*NIPATTFCMFSFTDKVL 435
L+T+D S+ T LP L N+S LP F+ + + + F FS T L
Sbjct: 1525 LSTVDFQSSFQTANLPGLINISAFLPEFTSEAVSDYTKECIASGFTMARFLPFS-TSSTL 1583
Query: 434 LPKPSVSGTALSSVD 390
K S+S ++D
Sbjct: 1584 ADKDSLSAVKKLALD 1598
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +1
Query: 277 NSGNFISNKLQSSTKFISNKIETQVKALNFGGPFASRTSTL-ESAVPETEGFGSKTLSVK 453
NS FI+ ++ + + +++ L P A+ ++ E+ + F + T SV
Sbjct: 10 NSSTFITTSMEEKLVPLVPS-DVKLRFLTCPQPGAAVIDSITEATLTAALVFQALTPSVL 68
Query: 454 ENIQNVVAGIFQPKPIVDTISES 522
+ + + + P P+VD I ES
Sbjct: 69 DGVDAIAVACYSPTPLVDMIRES 91
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.6
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +3
Query: 510 NQRIRKIRQHWRQILQRGQSH 572
N++I++++ HW+Q+L R + +
Sbjct: 121 NKKIKRLQSHWKQVLGRWEEN 141
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 647 ITRAATEKLNNLGWKANWFIILSLLHF 727
I R T+K+NNLG K + HF
Sbjct: 142 IKRRVTQKINNLGAKVATLFTFEVTHF 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,471
Number of Sequences: 5004
Number of extensions: 65362
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -