Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H03
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142...    34   0.13 
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    29   3.8  

>04_04_1548 -
           34313212-34313304,34313518-34313632,34314097-34314287,
           34314391-34315379,34315989-34316136,34316349-34316424,
           34316946-34317110,34317196-34317286,34318069-34318153,
           34318256-34318411,34318479-34318586,34318713-34318811,
           34318927-34319036,34319139-34319208
          Length = 831

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
 Frame = +1

Query: 178 VDLPVFDQPQTNFDIQPNTVIEAENYPGGEPDTNSGNFISNKLQSSTKFISNKIETQVKA 357
           VDL  F+QP  +   Q       + + G +  +  G+ + N   S    + NKI   V+ 
Sbjct: 570 VDLSRFNQPVASEQQQQQQQAWKQKFMGSQSVSFGGSVLHNSPTSKDGSVENKIGRDVQN 629

Query: 358 LNFGGPFASRTSTLESAVPE-----TEGFGSKTLSVKENIQNVVAGIFQPKP-IVDTISE 519
            +   P    +S L + VP      ++G  S   S    +QN + G       ++    E
Sbjct: 630 QSLFSPQVDSSSLLYNMVPNLTSNVSDGNLSTIPSGSTYLQNAMYGCLDDSSGLLQNTGE 689

Query: 520 SEKYGNTGDKFYSAGKV 570
           ++    T  K Y +G V
Sbjct: 690 NDPATRTFVKVYKSGSV 706


>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 36  LSF*LETQRASEQHADRLDYQDAAFLNNVITAVRQYQYLGTCG 164
           L F L+ QR  +  AD L     AFL++ I    Q   LG CG
Sbjct: 297 LDFLLQLQRRKQDIADNLQ-DTVAFLSSDINEAHQQSALGQCG 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,189
Number of Sequences: 37544
Number of extensions: 414459
Number of successful extensions: 1156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)