Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H03
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical pr...    30   2.6  
L16530-1|AAA28161.1|  163|Caenorhabditis elegans ubiquitin-like:...    28   7.9  
AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-lik...    28   7.9  

>Z81118-3|CAB03325.1|  346|Caenorhabditis elegans Hypothetical
           protein T10G3.2 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 487 EIFRPQRFVCFLSLIKFYFQNLPFLARRSRVWMF 386
           +IF P    CF SL+  Y+ +  FLA R+  + F
Sbjct: 48  KIFHPMFSFCFFSLLLLYYSSTTFLAIRNITFSF 81


>L16530-1|AAA28161.1|  163|Caenorhabditis elegans
           ubiquitin-like:ribosomal proteinfusion protein protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 216 KVCLRLVKYWQVDSNGRVRRCR 151
           KV L ++KY+++D NG++ R R
Sbjct: 91  KVKLAVLKYYKIDENGKITRLR 112


>AC006651-4|AAF39865.1|  163|Caenorhabditis elegans Ubiquitin-like
           family protein 1,isoform a protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 216 KVCLRLVKYWQVDSNGRVRRCR 151
           KV L ++KY+++D NG++ R R
Sbjct: 91  KVKLAVLKYYKIDENGKITRLR 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,375
Number of Sequences: 27780
Number of extensions: 374494
Number of successful extensions: 1104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)