Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H03
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.71 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.94 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   2.2  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   2.2  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 397 LESAVP-ETEGFGSKTLSVKENIQNVVAGIFQPKP 498
           L+ AVP +  GF  K +SVKE  +  VAG  +  P
Sbjct: 299 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 333


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 397 LESAVP-ETEGFGSKTLSVKENIQNVVAG 480
           L+ AVP +  GF  K +SVKE  +  VAG
Sbjct: 242 LQEAVPGDNVGFNVKNVSVKELRRGYVAG 270


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 397 LESAVP-ETEGFGSKTLSVKENIQNVVAGIFQPKP 498
           L  A+P +  GF  K +SVKE  +  VAG  + +P
Sbjct: 299 LTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQP 333


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 397 LESAVP-ETEGFGSKTLSVKENIQNVVAGIFQPKP 498
           L  A+P +  GF  K +SVKE  +  VAG  + +P
Sbjct: 10  LTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQP 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,881
Number of Sequences: 438
Number of extensions: 4615
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)