Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_H02
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   1.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   5.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   5.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   9.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   9.3  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   9.3  

>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 691 PXXVCWS*SPANGPVCAMGTFLSPLTASGTFLGAVMVRTP-SDDSRDSTVSGAAP 530
           P  + ++      P  +   FL+P+T SGTF  +     P S   R +T S A P
Sbjct: 371 PYPISYAAESVPRPATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 583  PSPRRGRYPTPSRERERCPSHRPVRSQE 666
            PS +  +  TPSRE+ R  +  PV+S++
Sbjct: 1260 PSSKDTKIETPSREQSRSQTASPVKSEK 1287


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 502 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRGRYPT 612
           SS   TR  +  R     RGC  T   P PR G   T
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAGHSHT 355


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 531 GAAPETVESRLSSDGVLTITAPRKVPD 611
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 634 TFLSPLTASGTFLGAVMVRTPSDDS-RDSTVSGAAP 530
           +F+S +TA  T  GAV+V  P+  +  ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 277 PVQCSPXTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 387
           PVQ SP  TSD+ D  +L+  +      P    S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,836
Number of Sequences: 5004
Number of extensions: 50923
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)