Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G24
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    37   0.003
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    33   0.055
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    31   0.17 
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   3.6  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   4.8  

>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +1

Query: 589 NQ*SVPYNAVNIPFNFLIYF*RFQTNFYFNFSWKQI 696
           N+  VP++A+N+P  FLI++  F++N  +N++  QI
Sbjct: 52  NEDMVPFSAINLPIRFLIFYNAFRSNTSWNYNESQI 87


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -2

Query: 421 SYYPLNFRAQVTITDLPEALPLIRLNINENKSKIGSMGGYATAESLIWG 275
           S YP   RA V++TD  +A+  +  N+ +NKS   +M    T++ L+WG
Sbjct: 202 SKYP---RALVSMTDTEDAIEFMEKNVEKNKS---AMSNNITSDILVWG 244


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -2

Query: 379 DLPEALPLIRLNINENKSKIGSMGGYATAESLIWGDQYSSTVPTIK*MLLHLYSSKIPKT 200
           +LP+  PL  L     +   GS  G+ TA+ ++  D + + VP+       LYS +  K 
Sbjct: 340 ELPKISPLQALPPLPLEKLYGSQDGFETAKKIVGDDLFKAFVPSAVTTASSLYSEETAKV 399

Query: 199 F 197
           F
Sbjct: 400 F 400


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 394 QVTITDLPEALPLIRLNINENKSKIGSMGGYATAESLIW 278
           QV  TDLP+ +  ++ N++ N   I    G  +   L W
Sbjct: 160 QVVCTDLPDIVENMQYNVDYNSELIQQYAGSVSCHVLDW 198


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 481 DTWVSSSTASTPL*NRSF*YSYY-PLNFRAQVTITDLPEALPL 356
           DTW+++  AS PL N  + Y Y+  ++  + VT  +   ++PL
Sbjct: 233 DTWMTTMKASCPLCNEDY-YKYFLQMDAASSVTHENAAWSIPL 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,665
Number of Sequences: 5004
Number of extensions: 67296
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)