Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G20
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    30   0.36 
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    30   0.48 
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    26   5.9  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    26   7.8  

>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 552 GTPYLRLGTVMNNLSPTFSTPIGTLLY*TKNLPVSFSTGFTN 427
           G+P+ +   V NN S TF   + T L+ +KN   SF+  F+N
Sbjct: 112 GSPFYKNPVVANNPSSTFD--MSTNLFNSKNANTSFTNAFSN 151


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 532 RDCNEQSVANLFNAHWHIVILNEESSCFVLDRLHE 428
           R+ N Q++ N F+A WH+++    S     DR HE
Sbjct: 716 REFNRQTLRNAFDA-WHLLMFRVTSLVMQADRFHE 749


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 464 FVQYNNVPMGVEKVGDRLF 520
           F QYNNVP+G++ V + ++
Sbjct: 272 FEQYNNVPLGIKGVIEAIY 290


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 193 TGSSDGEQ-QKQQENLHFDDRLITNLIL 113
           + SSD EQ +KQ +++H D+  + +LIL
Sbjct: 14  SSSSDAEQWEKQTKSVHIDNSDVNSLIL 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,641
Number of Sequences: 5004
Number of extensions: 57112
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)