Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G19
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    36   0.010
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   3.4  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   4.5  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    26   7.9  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -3

Query: 707 FFTPSNSRQAXDLVSXLQEXYQMISPQLQSMA 612
           +FT  N++QA +LVS L E  Q I P+L+ MA
Sbjct: 472 YFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 402 HNIYLYYEDSPS*KCQQKSYLIVVKSXVTTAPPLATLA 515
           H+IY+    S    C +  YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 783 YPNXSEXYIHXIGRLDVPNXKGXHMXFY 700
           +P   E Y+H IGR    N KG  + F+
Sbjct: 493 FPLTIEDYVHRIGRTGRANTKGTAITFF 520


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -2

Query: 840 TDFQLGGLXLXGXKXX-KFWYPNXSEXYIHXIGRLDVPNXKGXHMXFY 700
           TD    G+   G K    F +P     YIH IGR       G  + F+
Sbjct: 345 TDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFF 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,565
Number of Sequences: 5004
Number of extensions: 32418
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)