Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G16
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    28   2.1  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    27   4.8  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   6.3  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   6.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   8.4  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   8.4  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +2

Query: 416 SSFLPGGEKISTFSALIRQVSNLNEKVKNRLEQLDDFDDDSVRKTMGLSQQEFVTKINML 595
           S F    E+IS    LI+ +S  + ++ N  E   DF++ SV K +GL   E + K+  L
Sbjct: 809 SEFYCCDEEISK-DLLIKSLSQNSAEILNPAEL--DFEETSVSKHLGLYIDEMIKKLTAL 865


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 464 IRQVSNLNEKVKNRLEQLDDF--DDDSVRKTMGLSQQEFVTKINMLNDEIK 610
           IR++  L E+ KN+ EQL     D D  R  + + Q++   +I     ++K
Sbjct: 26  IREIRELQERNKNKYEQLLQARKDLDRFRSNLNVQQEQLQNEILGFKQDVK 76


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -2

Query: 795 KLLPKLFSQSLSKTKLPNVSRISVMRMNLLG*KCMTLTSDSSLEHWIPILKAF 637
           K +P + SQ+L+K K+ +V   SV+  ++    C T T  ++++H  P L  +
Sbjct: 95  KSIP-VISQALTKYKITDVVMDSVIISSMGNVMCETPTIPATIQHLFPHLLVY 146


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 347 KEWNTRRTIVLNRYTTGEKLTIVSSFLPGGEKISTFSALIRQVSNLNEKVKNRLEQLDDF 526
           K WNT+R  +L+   TG ++  +       E IST   +  +V+  N    +R+  L   
Sbjct: 444 KLWNTQRGSMLHNIDTGSQVCNLLWSKQTNEFISTHGFMENEVALWNYPSVSRVGTLKGH 503

Query: 527 DDDSVRKTMGLSQQEFVT 580
            D  +   M  + +  VT
Sbjct: 504 TDRVLYLAMSPNGENIVT 521


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 690 TLTSDSSLEHWIPILKAFTLCSDSHAFLISSF 595
           T + + S+EHW+P+    TL  D++ ++ S F
Sbjct: 315 TQSFNDSMEHWVPVCFP-TLNPDAYIYIYSYF 345


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 560  SQQEFVTKINMLNDEIKKAWESEQRV 637
            +Q E +TK+ +    +K AWES Q++
Sbjct: 1098 TQDEVLTKLPVDQASLKAAWESSQKL 1123


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/54 (20%), Positives = 28/54 (51%)
 Frame = +2

Query: 533 DSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQRVKAFKIGIQCSKLLSDVNVM 694
           D+V +  G +  + +  I +L  ++  ++  E  +    IG+ C K++ + N++
Sbjct: 181 DAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANIL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,676,063
Number of Sequences: 5004
Number of extensions: 78818
Number of successful extensions: 239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)