Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G16
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    24   2.2  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    24   2.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   5.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.7  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   8.7  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 808 EQASQAFAQTFFTEPIED*VTECVQDIGDENE 713
           E  ++      FTE + + + +CV    DE+E
Sbjct: 77  ESGTRELTPDDFTEDVHEIIEQCVSKAADEDE 108


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 808 EQASQAFAQTFFTEPIED*VTECVQDIGDENE 713
           E  ++      FTE + + + +CV    DE+E
Sbjct: 77  ESGTRELTPDDFTEDVHEIIEQCVSKAADEDE 108


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 361 CIPFFCIIYPYTLIIS 314
           CIP   IIY Y+ I+S
Sbjct: 221 CIPMILIIYYYSQIVS 236


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +2

Query: 443 ISTFSALIRQVSNLNE----KVKNRLEQLDDFD 529
           +S ++ LIR VSN N+    K+  RL QL D +
Sbjct: 29  LSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLN 61


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 710 KFILITDILDTF 745
           KF+L T ILDTF
Sbjct: 305 KFVLFTMILDTF 316


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 506 LEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQ 631
           +EQ  D  D ++  +  +   E  TK N   D+I +   +E+
Sbjct: 1   MEQFHDMSDGNIHMSDVIEVIETDTKYNGREDQIPREMNTER 42


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 506 LEQLDDFDDDSVRKTMGLSQQEFVTKINMLNDEIKKAWESEQ 631
           +EQ  D  D ++  +  +   E  TK N   D+I +   +E+
Sbjct: 1   MEQFHDMSDGNIHMSDVIEVIETDTKYNGREDQIPREMNTER 42


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 403 LLSSCVSIEDYCTSCI 356
           LLSSCVS +  C+S +
Sbjct: 917 LLSSCVSNDGGCSSLV 932


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 386 YTTGEKLTIVSSFLP 430
           ++TGE+  I S+FLP
Sbjct: 142 FSTGERCRISSNFLP 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,807
Number of Sequences: 438
Number of extensions: 5304
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)