Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G14
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    52   8e-08
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    30   0.47 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   3.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   5.7  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   5.7  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 40/155 (25%), Positives = 60/155 (38%)
 Frame = +1

Query: 301 EELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLEGXXXXXXX 480
           +EL  +    + D  + D    ++ + SE   KR K +     S+D+ +           
Sbjct: 105 QELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSE 164

Query: 481 XXXXXAALLAELNRXXXXXXXXXXXXXXXXXXXXXXXXMENILSGNPLLNYSAAGQKNDM 660
                  LL EL                             I  GN LLN +++G     
Sbjct: 165 DETQQ--LLRELENIKQERKREQMLQEEKNRALEQEKREREIAFGNELLNKASSGS---F 219

Query: 661 KVKRRWDDDVVFKNCARSEPEKKPNTFINDSLRSE 765
           +VKRRWD+DVVF+N  +   +     F+ND LRSE
Sbjct: 220 QVKRRWDEDVVFRNTHKGVDDTPRPGFVNDMLRSE 254



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 25/44 (56%), Positives = 26/44 (59%)
 Frame = +3

Query: 147 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYR 278
           MTTA RP FDPARG          A +R  SSR LP H KLKYR
Sbjct: 1   MTTAHRPQFDPARG------HSEMAPTRITSSRALPAHLKLKYR 38


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 340 DREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 456
           D+E+D+  TT K++SEP A    +    A  + + D  E
Sbjct: 577 DKEEDLNITTVKQSSEPTADDNLIPNKEAEIIQSSDEFE 615


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 301 EELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKV--DQVPAASLDADDPL 453
           EE+  ++F+  +DD +K ++    KR    + K+ ++  D++ +++     P+
Sbjct: 450 EEMAFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKKRIVTDKIGSSATSGSFPV 502


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 664 VKRRWDDDVVFKNCARSEPEKKPNTFINDSLRSESIR-NYGKVRE 795
           +K+   DD +F    +S+P KK N   N+   S+ +  ++G ++E
Sbjct: 337 IKKESSDDAMFSGLKKSKP-KKSNKSNNNQADSDRLNLSFGTIKE 380


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  LTSSRVFLNVYXAQVARHKITVHQVSTSVHYDY 154
           L + RVFL+ Y ++    K+T+H    +  Y Y
Sbjct: 8   LPNQRVFLHCYPSEYLAKKVTIHDKIINRIYKY 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,231
Number of Sequences: 5004
Number of extensions: 41963
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)