Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G13
         (984 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical ...    30   2.9  
AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical ...    29   5.1  

>AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical
           protein F48G7.13 protein.
          Length = 272

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 349 DASDXXSINDTDIXNSLIIFIYNCVYFRFIHNTN*LQMCQESCQSIXNTFIALSL 185
           ++S   + + T I N  + F++  V F  I N+N    CQE  QS   +   L +
Sbjct: 204 NSSKFLNFSKTKIINFFLHFLFQFVKFELIPNSNFGVSCQEMYQSTRTSIFELKI 258


>AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical
           protein T23B12.2 protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 494 SNXNXQXDDSRQYLXSNPQDVLXPVYTR*PTGWVCXXXRPXXEXXGXNXLHPPLFRTPP 670
           S  + +  D+R+ L   P++     + + P  WV        E  G   LHP +FRT P
Sbjct: 24  STSSGESIDTRRELWRKPENP----FIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSP 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,358,620
Number of Sequences: 27780
Number of extensions: 250741
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)