Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G12
         (1249 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alph...    33   1.6  

>AL138761-4|CAI12398.1| 1415|Homo sapiens collagen type XVII alpha 1
            protein.
          Length = 1415

 Score = 33.5 bits (73), Expect = 1.6
 Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
 Frame = +1

Query: 919  PPXPGXSAAXSXGGXSGXXVPX*TXXRPPXSGXXX-DGXLAPPPGXISXL*AGSRGIRXD 1095
            PP P         G  G  +P      PP S     +  L+ PPG       G  G + D
Sbjct: 867  PPGPSIPGPPGPRGPPGEGLPG--PPGPPGSFLSNSETFLSGPPGP-----PGPPGPKGD 919

Query: 1096 QGRGPGXP--LXXP*XPKKAXSXGLLXGXDPPPXXXPPRPXXQLQKGG 1233
            QG  PG P  L  P  P +  S   +    PP    PP P   +   G
Sbjct: 920  QG-DPGVPGALGIPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSG 966


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,858,558
Number of Sequences: 237096
Number of extensions: 1542382
Number of successful extensions: 3225
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3187
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17779932290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)