Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_G11
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1240 - 28612250-28613704 33 0.40
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784 31 1.2
01_03_0224 + 13940419-13941786 30 2.1
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735... 30 2.8
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 29 4.9
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 6.5
11_03_0010 - 8922361-8922375,8923888-8924610 29 6.5
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 29 6.5
04_04_0462 + 25393733-25394347 29 6.5
02_01_0384 - 2781362-2782299,2782320-2782428 29 6.5
09_01_0183 - 2652173-2653924 28 8.6
09_01_0013 - 355103-355435 28 8.6
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 28 8.6
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 8.6
02_05_0683 + 30877731-30878243 28 8.6
>06_03_1240 - 28612250-28613704
Length = 484
Score = 32.7 bits (71), Expect = 0.40
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 288 RRHNVLKWRLDAAAPPT--KLLCEGRRSLLHSWPLSLQRFARSWSAALLCASQSTCTYAT 461
RRH VL +RL + PPT LL ++L S LS S+ AA+ C + +A
Sbjct: 97 RRHAVLSFRLLDSLPPTHPHLLSTPALAVLLSTALSASAPGASFDAAVTCFDSAARVWAR 156
Query: 462 APRQ 473
A R+
Sbjct: 157 AGRE 160
>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
Length = 394
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 576 PGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPP 680
P PA S A + AT SPR A +PPW T PP
Sbjct: 91 PMPTPAASSA-LAPATSSPRPASPPTPPWTTAPPP 124
>01_03_0224 + 13940419-13941786
Length = 455
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 603 APIGRATWSPRLAPARSPPWGTTSPPRDYE 692
AP ATWS L ARSPP P R+Y+
Sbjct: 200 APAVHATWSRELLDARSPP-APAFPHREYD 228
>04_04_0140 -
23073032-23073130,23073270-23073338,23073448-23073539,
23073637-23074550,23074646-23074779,23075003-23075058,
23077556-23077646
Length = 484
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 432 HRAALRSTNARTFGVRVASCGEGFVDPRIAVWWAVRLHPI 313
HR+ L + V GEG +PR A WW H +
Sbjct: 35 HRSDLSMVTSSVLPKVVDDAGEGEANPRRAKWWYATFHSV 74
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 605 SDRESDVVPSARAGQKSALGNYISPPGLREGSVRQIPGLHERSHDV 742
S R PSA K+A N++ G+REG R + + + +H V
Sbjct: 48 STRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPIGDYTHVV 93
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 283 EEDGTMCSSGDWMQPHRPPNCYARVDEAFSTAGHSHSKGSRVRGAQR 423
++DG M G +QP RP + R D+ + G + SK +RG +R
Sbjct: 417 DDDGGMFGQGKGVQPGRPGSAGMRSDDGGDSDG-ARSKLVSLRGGRR 462
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 655 GLLAG--ASRGDHVALPIGAY-ERAGFNPGNVC 566
G AG A D A IGAY AG+NPG +C
Sbjct: 61 GAAAGMAADAADSAAANIGAYIPEAGYNPGKLC 93
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 579 GLNPARSYAPIGRATWSPRLAPARSPPWG 665
G++P+R A +P LAPA +P WG
Sbjct: 163 GVSPSRVAVTAAAAEPTPALAPAPAPEWG 191
>04_04_0462 + 25393733-25394347
Length = 204
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 667 VPQGGLLAGASRGDHVALPIGAYERAGFNPGNVCRVC 557
VP GG G G H + +Y A G+V RVC
Sbjct: 96 VPPGGKAGGVCLGGHSVAAVVSYGGAFLGEGSVGRVC 132
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 561 TRQTLPGLNPARSYAPIGRATWSPRLAPARSPP-WGTTSPPRDYEKAVS 704
T +T L+P S +P + RLAP RSPP G + PR A S
Sbjct: 199 TARTALALSPTTSASPASPSR--TRLAPPRSPPAGGASGAPRRSSSAAS 245
>09_01_0183 - 2652173-2653924
Length = 583
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 376 LWRRLRRPSHSSLVGGAAASNRHLSTLCRLPH-VVFGDG 263
L R L SHS+L AAA+ HL+T C VVF +G
Sbjct: 207 LLRLLDASSHSALRDRAAATVAHLATACVASRKVVFDEG 245
>09_01_0013 - 355103-355435
Length = 110
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 591 ARSYAPIGRATWSPRLAPARSPPW 662
AR A GR W PR P R P W
Sbjct: 28 ARGGAAGGRRAWRPRWRPQRRPRW 51
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 586 IPHVHMLRSGERRGPLGSRRPEVRPGELH 672
IPH L + + P+ S++P+VR E+H
Sbjct: 158 IPHSEHLNNDLTQDPVASKKPKVRKKEIH 186
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 587 SRTFICSDRESDVVPSARAGQKSALGNYISPPGLREGSVRQIPGLHERS 733
SRT++ S + +VP + + S GN +PPG +G ++ LH R+
Sbjct: 849 SRTYVSSAKNRFIVPKEQLQKTSTEGN--APPGSLQG---EVAPLHSRN 892
>02_05_0683 + 30877731-30878243
Length = 170
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 679 GGDVVPQGGLLAG-ASRGDHVALPIGAYERAGFNPGNVC 566
GG GG A A+RG VA+P+ A A + GN C
Sbjct: 126 GGSGASDGGSTAAMAARGSTVAVPVAAAAVARGSRGNTC 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,979,748
Number of Sequences: 37544
Number of extensions: 474601
Number of successful extensions: 1798
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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