Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G09
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    59   7e-10
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    28   2.0  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    26   6.1  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
 Frame = +3

Query: 471 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 641
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 642 NGFWAIKYLLVXXXXXXXXXXXXXQFASTW-MVFGMIGGFCYIVIQLILIIDFAHSWAE 815
           NG W  K +L              +F S W  +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 127 NGLWPFKIVL-WFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -3

Query: 815 FSPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEXCSDNATNNQ*IFDGPKTILN 636
           FS G  +I   N L NNV E +N +  + C+     +   C    TN+    D P+T  N
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPET-FN 104

Query: 635 SS 630
           SS
Sbjct: 105 SS 106


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 162 ICILILLYAHINIKIFYICH*TQQNSEF 79
           I  ++++ A   +KI YICH   QN  F
Sbjct: 156 IAAVVVIIAVAMVKILYICHWLLQNFNF 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,269
Number of Sequences: 5004
Number of extensions: 72222
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)