Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G09
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    63   3e-10
11_03_0173 + 11162708-11163010                                         28   8.5  
09_04_0452 - 17710180-17710968                                         28   8.5  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = +3

Query: 540 AVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXQF 719
           AV R++    +FF ++A+IM G+K  KDPR  I +G W  K +                 
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQKDPRDKIHHGGWMAK-IFCWVVIVFLMFFVPNGV 137

Query: 720 ASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWV 824
            S +      G   ++++Q++L++DF H W E WV
Sbjct: 138 VSFYESISKFGSGLFLLVQVVLLLDFVHGWNENWV 172


>11_03_0173 + 11162708-11163010
          Length = 100

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 788 DKNELDNNVAEASNHSKHHPCRSKLTSWDEXCSDNATNNQ*IFDGPKTILNSSSWIFR 615
           ++ E  ++ AE SN +        LT W   C D       IFDG  T +N++ W+ R
Sbjct: 7   EEEEDGSHSAEVSNDAARVVRGMTLTRWTSMCLD-------IFDGSGTPVNAADWMRR 57


>09_04_0452 - 17710180-17710968
          Length = 262

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 549 RITFAT--CLFFLLMALIMIGVKSSKDPRAGIQNG-FWAIKYLLV 674
           R+T AT   +  L +  +++G+  SKD  AG+ NG +W   +L++
Sbjct: 150 RLTAATLNAVALLTIGAVVLGLHVSKDRPAGVTNGKYWMGFFLII 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,636,910
Number of Sequences: 37544
Number of extensions: 436312
Number of successful extensions: 986
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)