Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G09
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...   113   1e-25
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...   105   5e-23
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    33   0.20 
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    28   7.5  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    28   7.5  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    28   7.5  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   10.0 
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   10.0 
U46671-1|AAA85747.1|  364|Caenorhabditis elegans Hypothetical pr...    28   10.0 
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score =  113 bits (273), Expect = 1e-25
 Identities = 54/105 (51%), Positives = 66/105 (62%)
 Frame = +3

Query: 510 VDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXX 689
           + C  A G+ AVYR+  AT  F+LL  LIMIGVK SKD R+ IQNGFW  KYL++     
Sbjct: 82  ISCAHATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDGRSSIQNGFWFFKYLILGALIV 141

Query: 690 XXXXXXXXQFASTWMVFGMIGGFCYIVIQLILIIDFAHSWAEIWV 824
                     A+  M  G+IGGF +I+IQLILI+DFAH  AE WV
Sbjct: 142 GFFFIRSESLATPLMYIGLIGGFMFILIQLILIVDFAHGLAEAWV 186


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score =  105 bits (251), Expect = 5e-23
 Identities = 50/102 (49%), Positives = 62/102 (60%)
 Frame = +3

Query: 510 VDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXX 689
           V+C+ A+GY AVYR+      FF L  L+M GV SSKD R+ IQNGFW  KYLL+     
Sbjct: 82  VNCEHAIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFGIIG 141

Query: 690 XXXXXXXXQFASTWMVFGMIGGFCYIVIQLILIIDFAHSWAE 815
                     A+  M  GM+G F +I+IQLILI+DFAH  AE
Sbjct: 142 GFFFIGSETLATPLMYIGMLGAFLFILIQLILIVDFAHGLAE 183



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 344 NSTSSRLMYALMLVLVTIVCCITL 415
           NST++R+MYALML+  T +  + L
Sbjct: 35  NSTTTRIMYALMLISATFMAVVML 58


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 510 VDCDEAVGYLAVYRITFATCLFFLLMALIM 599
           + C  A G+ AVYR+  AT  F+LL  LI+
Sbjct: 82  ISCAHATGFQAVYRVCAATASFYLLFILIV 111



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 780 ILIIDFAHSWAEIWV 824
           ILI+DFAH  AE WV
Sbjct: 108 ILIVDFAHGLAEAWV 122


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 307 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 405
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 307 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 405
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 307 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 405
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 456 KTVAFEVHYVIREXKVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSE 310
           K+V   VH +      IQH  +  TS+S   R  ++EL+Q+    + SE
Sbjct: 370 KSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESE 418


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 456 KTVAFEVHYVIREXKVIQHTIVTSTSISAYIRREEVELVQDGHAEQHSE 310
           K+V   VH +      IQH  +  TS+S   R  ++EL+Q+    + SE
Sbjct: 370 KSVGMRVHILKVSNDQIQHLQMFETSMSVDERLVDLELIQNYFPSKESE 418


>U46671-1|AAA85747.1|  364|Caenorhabditis elegans Hypothetical
           protein C14E2.2 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 432 YVIREXKVIQHTIVTSTSISAYIRREEVELVQDG 331
           ++IR+  +  +T +TST +   +R  +V L+ DG
Sbjct: 301 HIIRQTGMFSYTGLTSTQVDHLVRNHKVFLLSDG 334


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 364 YVCTNAGAGNYC-VLYHFXLPDYI 432
           YVC+N+GAGN C V Y      Y+
Sbjct: 636 YVCSNSGAGNSCPVNYECYFDGYV 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,312,684
Number of Sequences: 27780
Number of extensions: 409172
Number of successful extensions: 1089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)