Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G06
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    29   0.70 
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   6.5  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   6.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   8.6  

>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 771 TPTRSPTFNGPVHSIXNQIIWNIFSQSIDKV 863
           TP     FN P HS+ ++++  +F Q ID V
Sbjct: 146 TPVYESFFNQPRHSLDSKLLLQLFKQRIDTV 176


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = -1

Query: 239 RKYVYYTLSH----NYFKF-YFTQVILVSNVN*ENYMNENPKRN 123
           RK++Y+T       +Y +  YFT    +S++N +NY  EN + N
Sbjct: 449 RKWIYFTNKSPEMVSYLREKYFTPSRWISHLNFQNYRQENQRVN 492


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 664 KRILILNKRQC*PLSNVQI*VTAYFC*EIYYTYQRKLPLGVQLSTGLFTRSXTK 825
           + I +LN     P + V +  +A  C E+   +QR   LG+    G F RS  K
Sbjct: 707 RTINLLNMLTSDPKNTVYV-FSALSCQELEQLFQRVPKLGIVAENGCFVRSPPK 759


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 417 FGQNVKKDLIPLLIHTKDDKTIELLIRILVNLTIP 521
           FG+    +   ++ HT++ + +E L+R L++L+ P
Sbjct: 571 FGRVKLNEQTEIIWHTRNYRIVEALVRKLIHLSTP 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,997
Number of Sequences: 5004
Number of extensions: 73529
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)