Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_G01
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +1

Query: 745 PXPPPXXPXXPXXAPXXRAAPPPPXXXXXXPPXAPPXXXPPXXXP 879
           P P P  P     AP  R +PP P      PP  PP   PP   P
Sbjct: 21  PGPQPS-PHQSPQAPQ-RGSPPNPSQGP--PPGGPP-GAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +2

Query: 668 QXXXPPPXGCPXTRXGPPPXXQXXQ--APPPPXXXPXXXXPXPXXGPPPPP 814
           Q    P  G P  +  P    Q  Q  +PP P   P      P  GPP  P
Sbjct: 11  QQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGP------PPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 864 PXPAPHXXPXAXXXKKXPXXPXPXPP 941
           P P+PH  P A   +  P  P   PP
Sbjct: 23  PQPSPHQSPQA-PQRGSPPNPSQGPP 47



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 13/46 (28%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
 Frame = +2

Query: 731 QXXQAPPPPXXXPXXXXPXPXXGPPP-PPXXXXXXTXPXRPPXXXP 865
           Q     P P   P      P  G PP P         P  PP   P
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,100
Number of Sequences: 438
Number of extensions: 7450
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)