Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F23
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    29   5.9  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 211 GILQGIETK*FNNYLHANGSGNKRKNDE 128
           GI+ GI+TK     LH NGSGN+++ +E
Sbjct: 45  GIIAGIDTKPHLTGLH-NGSGNRKRVEE 71


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -3

Query: 539 SLVRLLRGYRNGESTFKISSKSVEVMIFSKLSKLLSG*VNFIYFNYFCKYIFRINSSNFF 360
           SL +L + +  G +TF   SKS    + +K SK +    N +Y    C  +F  + +  F
Sbjct: 324 SLYKLPKLFLTG-ATFMDVSKSKGKQVITKASKWIKSGKNLVYETSGCSELF--DETTKF 380

Query: 359 RTNGK 345
            T+GK
Sbjct: 381 NTDGK 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,506
Number of Sequences: 27780
Number of extensions: 329251
Number of successful extensions: 859
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)