Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_F22
(1008 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 35 0.080
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.43
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.43
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.43
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 32 0.56
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 1.3
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.7
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 31 1.7
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 31 1.7
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 31 1.7
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.3
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 30 3.0
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 30 3.0
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 3.0
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 3.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 29 4.0
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 29 4.0
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 4.0
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.2
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 29 5.2
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 6.9
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 6.9
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.9
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 6.9
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 6.9
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 6.9
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 6.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.9
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 29 6.9
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 29 6.9
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 6.9
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 9.2
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 28 9.2
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 28 9.2
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 28 9.2
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 28 9.2
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 9.2
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 9.2
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 28 9.2
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 28 9.2
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 35.1 bits (77), Expect = 0.080
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Frame = -2
Query: 395 GRAAPPHXXQ-----GPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPP 255
G PPH GP P+G Q P P GG P P GPPPP
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPP--PRLGMPPPGPPPP 1606
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +1
Query: 247 RXXGGGGPAXGAAXXXWXGPPPXPGXGXXXRGXPFGVSGPWXXWGGAARP 396
R GG P G PPP G G RG P GP GG P
Sbjct: 1463 RGRGGPPPPRGMNSPMRGMPPPMRGGGPPMRGGPPMRGGPPMFRGGPPGP 1512
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 259 GGGPAXGAAXXXWXGPPPXPGXGXXXRGXPFGVSGP 366
GG P W G PP P G +G P + GP
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGP 1592
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -2
Query: 395 GRAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
G PP P P G P P P GG P +P PPP G P
Sbjct: 262 GSPPPPRTGSPPPPPTGSP----PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -2
Query: 395 GRAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
G PP P P G P P P GG P +P PPP G P
Sbjct: 283 GSPPPPRTGSPPPPPTGSP----PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -2
Query: 395 GRAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
G PP P P G P P P GG P +P PPP G P
Sbjct: 268 GSPPPPRTGSPPPPPTGSP----PPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 32.3 bits (70), Expect = 0.56
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = -2
Query: 383 PPHXXQGPDTPKGXPRXQXPXPGXGG-GPXXXXXAAPXAGPPPPXXRXXGXXPG 225
P QGP P G + P PG G GP P AG PP G PG
Sbjct: 710 PQQPPQGPPGPPGPQQHPGPYPGYPGYGP--PGAMRPPAGFAPPPGAPYGYPPG 761
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 301 GPPPXPGXGXXXRGXPFGVSGPWXXWGGAARP 396
GPPP G G RG P G+ GP GG P
Sbjct: 153 GPPPLMGGGGDPRGPPGGMGGP-PGHGGMGGP 183
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 301 GPPPXPGXGXXXRGXPFGVSGPWXXWGGAARP 396
GPPP G G RG P G+ GP GG P
Sbjct: 433 GPPPLMGGGGDPRGPPGGMGGP-PGHGGMGGP 463
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Frame = -2
Query: 383 PPHXXQGPDTPKGXPRXQXPX----PGXGGGPXXXXXAA--PXAGPPPPXXRXXGXXPGL 222
PP GP G P P PG GG P P PPPP R PG+
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGM 362
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -1
Query: 321 PGXGGRPXPXXXGXAXXGPPPPXXPXGXXXARPXCF 214
PG GG P P G G PP P A P +
Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMY 363
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Frame = -2
Query: 383 PPHXXQGPDTPKGXPRXQXPX----PGXGGGPXXXXXAA--PXAGPPPPXXRXXGXXPGL 222
PP GP G P P PG GG P P PPPP R PG+
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGM 372
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -1
Query: 321 PGXGGRPXPXXXGXAXXGPPPPXXPXGXXXARPXCF 214
PG GG P P G G PP P A P +
Sbjct: 338 PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMY 373
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 537 AXPPVPPQSRGPQAXXGXGGASXPXPXGXGGGXVP 641
A PP PP GP G GAS P P G G P
Sbjct: 240 AGPPGPP---GPAGNPGSAGASEPGPAGPAGDAGP 271
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +3
Query: 537 AXPPVPPQSRGPQAXXGXGGASXPXPXGXGG 629
A PP PP GP G G+S P P G G
Sbjct: 258 AGPPGPPGPIGPPGQPGAPGSSQPGPQGPPG 288
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +3
Query: 537 AXPPVPPQSRGPQAXXGXGGASXPXPXGXGGGXVP 641
A PP PP GP G GAS P P G G P
Sbjct: 250 AGPPGPP---GPAGNPGSAGASEPGPAGPAGDAGP 281
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 631 PPPXPXGXGXEAPPXP 584
PPP P G G EAPP P
Sbjct: 42 PPPPPCGGGYEAPPPP 57
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 537 AXPPVPPQSRGPQAXXGXGGASXPXPXGXGG 629
A PP PP GP G GGA+ P P G G
Sbjct: 254 AGPPGPP---GPPGQDGSGGAAQPGPPGPPG 281
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 537 AXPPVPPQSRGPQAXXGXGGA-SXPXPXGXGGGXVPP 644
A PP PP GP G GA P P G G PP
Sbjct: 180 AGPPGPP---GPDGNAGPAGAPGVPGPDGDAGSPPPP 213
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -2
Query: 398 HGRAAPPHXXQGPDTPKGXPRXQ-XPXPGXGGGPXXXXXAAPXAGPPP 258
HG +APP G TP+ P+ PG G P A A PP
Sbjct: 1095 HGASAPPPTSYGAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALPP 1142
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -2
Query: 398 HGRAAPPHXXQGPDTPKGXPRXQ-XPXPGXGGGPXXXXXAAPXAGPPP 258
HG +APP G TP+ P+ PG G P A A PP
Sbjct: 1115 HGASAPPPTSYGAPTPQRPPQASYGAAPGAQGPPGGQFEAHGAAALPP 1162
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = -2
Query: 392 RAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
R PPH GP P P P P G P P PPPP G P
Sbjct: 268 RGPPPHHPYGPPHPMHHPYAMMPPP-FGFFPPPPRGHFP---PPPPHFMGRGMPP 318
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.9 bits (64), Expect = 3.0
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = -2
Query: 392 RAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
R PPH GP P P P P G P P PPPP G P
Sbjct: 268 RGPPPHHPYGPPHPMHHPYAMMPPP-FGFFPPPPRGHFP---PPPPHFMGRGMPP 318
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +3
Query: 543 PPVPPQSRGPQAXXG-XGGASXPXPXGXGGGXVPP 644
PP PP GP G G A P P G G PP
Sbjct: 160 PPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPP 194
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -1
Query: 336 GXAXRPGXGGRPXPXXXGXAXXGPPPPXXPXG 241
G A PG GRP G A GPP P P G
Sbjct: 174 GQAGAPGNDGRPG-QSGGAAIPGPPGPPGPSG 204
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 326 PXPGXGGGPXXXXXAAPXAGPPPP 255
P G GGG AAP PPPP
Sbjct: 21 PMAGGGGGGGGCAPAAPACAPPPP 44
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +3
Query: 543 PPVPPQSRGPQAXXG-XGGASXPXPXGXGGGXVPP 644
PP PP GP G G A P P G G PP
Sbjct: 162 PPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPP 196
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 537 AXPPVPPQSRGPQAXXGXGGASXPXPXGXGG 629
A PP P GP G G A P P G G
Sbjct: 238 AGPPGPAGPAGPDGQSGSGSAGGPGPKGPPG 268
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGAS-XPXPXGXGGGXVPP 644
P PP + PQ G G AS P P G G PP
Sbjct: 230 PTPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPP 263
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASX-PXPXGXGGGXVPP 644
P PP + PQ G G AS P P G G PP
Sbjct: 43 PPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPP 76
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASX-PXPXGXGGGXVPP 644
P PP + PQ G G AS P P G G PP
Sbjct: 106 PPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPP 139
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASX-PXPXGXGGGXVPP 644
P PP + PQ G G AS P P G G PP
Sbjct: 137 PPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPP 170
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASX-PXPXGXGGGXVPP 644
P PP + PQ G G AS P P G G PP
Sbjct: 261 PPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPP 294
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -2
Query: 383 PPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXPG 225
PP P P G P Q PG G P P A P P + PG
Sbjct: 132 PPPCQPCPQGPPGPP-GQPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPG 183
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASXPXPXGXGGGXVPP 644
P+PP+ GP A G P G GGG PP
Sbjct: 780 PMPPRG-GPGAPPPPGMRPPPGAPGGGGGMYPP 811
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASXPXPXGXGGGXVPP 644
P+PP+ GP A G P G GGG PP
Sbjct: 780 PMPPRG-GPGAPPPPGMRPPPGAPGGGGGMYPP 811
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Frame = -2
Query: 386 APPHXXQGPDTPKGXPRXQXPX--------PGXGGGPXXXXXAA-PXAGPPPP 255
APP Q P P+G P P PG GGG P G PPP
Sbjct: 772 APPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = -3
Query: 727 PRXXVGXPAXXXXXXXXXXXXXXXPAXXGGTXPPPXPXGXGXEAPPXPXXAWGPRLWGGT 548
P+ G PA G PP P G PP P + GP G
Sbjct: 204 PQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSPGPDGPAGV 263
Query: 547 GGXAXRKNP 521
G A P
Sbjct: 264 DGQAGPPGP 272
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 330 AXRPGXGGRPXPXXXGXAXXGPPPPXXPXG 241
A P GG P P GPPPP P G
Sbjct: 705 ALPPITGGPPPPPGLPPITGGPPPPPPPGG 734
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 330 AXRPGXGGRPXPXXXGXAXXGPPPPXXPXG 241
A P GG P P GPPPP P G
Sbjct: 705 ALPPITGGPPPPPGLPPITGGPPPPPPPGG 734
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASXPXPXGXGGGXVPP 644
P+PP+ GP A G P G GGG PP
Sbjct: 780 PMPPRG-GPGAPPPPGMRPPPGAPGGGGGMYPP 811
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Frame = -2
Query: 386 APPHXXQGPDTPKGXPRXQXPX--------PGXGGGPXXXXXAA-PXAGPPPP 255
APP Q P P+G P P PG GGG P G PPP
Sbjct: 772 APPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -1
Query: 321 PGXGGRPXPXXXGXAXXG-PPPPXXPXGXXXARP 223
PG G P P G G PPPP P G P
Sbjct: 674 PGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYP 707
Score = 28.3 bits (60), Expect = 9.2
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Frame = -2
Query: 395 GRAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXX----AAPXAGPPPP-XXRXXGXX 231
G PP QG G P P GG P A P GPPPP R G
Sbjct: 676 GGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYP 735
Query: 230 P 228
P
Sbjct: 736 P 736
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -1
Query: 321 PGXGGRPXPXXXGXAXXG-PPPPXXPXGXXXARP 223
PG G P P G G PPPP P G P
Sbjct: 674 PGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYP 707
Score = 28.3 bits (60), Expect = 9.2
Identities = 21/61 (34%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Frame = -2
Query: 395 GRAAPPHXXQGPDTPKGXPRXQXPXPGXGGGPXXXXX----AAPXAGPPPP-XXRXXGXX 231
G PP QG G P P GG P A P GPPPP R G
Sbjct: 676 GGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYP 735
Query: 230 P 228
P
Sbjct: 736 P 736
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 546 PVPPQSRGPQAXXGXGGASXPXPXGXGGGXVPP 644
P+PP+ GP A G P G GGG PP
Sbjct: 780 PMPPRG-GPGAPPPPGMRPPPGAPGGGGGMYPP 811
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 330 AXRPGXGGRPXPXXXGXAXXGPPPPXXPXG 241
A P GG P P GPPPP P G
Sbjct: 288 ALPPITGGPPPPPGLPPITGGPPPPPPPGG 317
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 256 GGGGPAXGAAXXXWXGPPPXPGXGXXXRGXPFGVSGP 366
GGG A A PPP P G PFG GP
Sbjct: 52 GGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGGPGP 88
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 256 GGGGPAXGAAXXXWXGPPPXPGXGXXXRGXPFGVSGP 366
GGG A A PPP P G PFG GP
Sbjct: 52 GGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGGPGP 88
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/69 (26%), Positives = 20/69 (28%)
Frame = -3
Query: 727 PRXXVGXPAXXXXXXXXXXXXXXXPAXXGGTXPPPXPXGXGXEAPPXPXXAWGPRLWGGT 548
P+ G PA G PP P G PP P + GP G
Sbjct: 204 PQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPGAPGNDGPPGPPGPKGSPGPDGPAGV 263
Query: 547 GGXAXRKNP 521
G A P
Sbjct: 264 DGQAGPPGP 272
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 543 PPVPPQSRGPQAXXGXGGASXPXPXGXGG 629
P PP GP G GG P P G G
Sbjct: 269 PQGPPGLAGPDGQPGHGGGGQPGPQGPPG 297
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -2
Query: 368 QGPDTPKGXPRXQXPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXPG 225
+G P G P Q P PG G P P P PP PG
Sbjct: 201 RGLPGPSGRPGPQGP-PGAPGQPGSGSTPGPAGPPGPPGPNGQPGHPG 247
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Frame = -2
Query: 365 GPDTPKGXPRXQXPX--PGXGGGPXXXXXAAPXAGPPPPXXRXXGXXPG 225
GP P G P P PG GGP P P P PG
Sbjct: 224 GPQGPPGPPGQAGPDGQPGAPGGPGTPGSKGPPGNPGAPGADGKPGAPG 272
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = -2
Query: 398 HGRAAP--PHXXQGPDTPKGXPRXQ-XPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
+G A P P +GP PKG P G G P P G PP + P
Sbjct: 230 NGAAGPAGPRGVKGPPGPKGLPGIAGLTEIGGQGPPGDAGGPGPVGGQGPPGPQGPQGPP 289
Query: 227 G 225
G
Sbjct: 290 G 290
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = -2
Query: 398 HGRAAP--PHXXQGPDTPKGXPRXQ-XPXPGXGGGPXXXXXAAPXAGPPPPXXRXXGXXP 228
+G A P P +GP PKG P G G P P G PP + P
Sbjct: 230 NGAAGPAGPRGVKGPPGPKGLPGIAGLTEIGGQGPPGDAGGPGPVGGQGPPGPQGPQGPP 289
Query: 227 G 225
G
Sbjct: 290 G 290
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 227 RAXXXPXGXXGGGGPXXAXPXXXGXGRPPXPGRXAXPVVXP 349
+A P G GGGGP P G G P P P P
Sbjct: 613 QAGGGPGGPGGGGGPPRG-PGGGGGGGPTGPPAPPKPPAKP 652
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +2
Query: 227 RAXXXPXGXXGGGGPXXAXPXXXGXGRPPXPGRXAXPVVXP 349
+A P G GGGGP P G G P P P P
Sbjct: 613 QAGGGPGGPGGGGGPPRG-PGGGGGGGPTGPPAPPKPPAKP 652
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 28.3 bits (60), Expect = 9.2
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = -2
Query: 395 GRAAP-PHXXQGPDTPKGXPRXQXP--XPGXGGGPXXXXXAAP-XAGPPPP 255
G A P P GP P G P P PG GG P AGPP P
Sbjct: 196 GYAEPGPAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPGPAGPPGP 246
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -3
Query: 643 GGTXP-PPXPXGXGXEAPPXPXXAWGPRLWGGTG 545
GG P P G G P P GPR +GG+G
Sbjct: 215 GGPAPGAPRAGGSGAGGAPRPPPPAGPRAFGGSG 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.148 0.528
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,082,487
Number of Sequences: 27780
Number of extensions: 206966
Number of successful extensions: 1579
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2646946214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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