Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_F21
(935 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 33 0.43
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.3
02_01_0090 - 637141-640263 31 1.3
04_04_0020 + 22182649-22182829,22183900-22183999,22184415-221844... 30 2.3
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.0
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 4.0
04_03_1022 - 21778315-21779007 29 5.3
02_04_0242 + 21210062-21210541 29 5.3
03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797 29 7.0
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160... 28 9.3
04_03_0904 + 20717005-20718087 28 9.3
03_01_0515 - 3864796-3865425 28 9.3
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.3
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 28 9.3
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 9.3
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 32.7 bits (71), Expect = 0.43
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -1
Query: 548 PXPXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPP 420
P P R PR R P P P P A S PP PPP
Sbjct: 75 PPPAPRPPRRHHRIPPPPPPLLPTPPPPPASISPTPAPPLPPP 117
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = -1
Query: 548 PXPXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPPXPXTXXWXPP 390
P P P S P P P P++ SS PP PPP P PP
Sbjct: 552 PPPSGNKPAFSPPPP-PPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPP 603
>02_01_0090 - 637141-640263
Length = 1040
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +1
Query: 421 GGGVGGXVXXDEXAXARGXAGXVXGAXPGPRSLTRGPRSXG 543
G GV + DE A G G V G RS GPRS G
Sbjct: 594 GNGVLRSINPDELAGNAGLCGGVLPPCSGSRSTAAGPRSRG 634
>04_04_0020 +
22182649-22182829,22183900-22183999,22184415-22184491,
22184718-22184809,22188655-22189767
Length = 520
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 760 PPXXXPPPXXGAXXPXGXXRGGGAXGG 680
PP PPP G RGGGA GG
Sbjct: 333 PPLPLPPPPNGKRSRADEGRGGGAGGG 359
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -1
Query: 548 PXPXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPPXPXTXXWXPP 390
P P P + G G P PA P A PP PP PP
Sbjct: 333 PPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPP 385
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = -1
Query: 548 PXPXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPPXPXTXXWXPP 390
P P GP+ PG P P P P P P P W P
Sbjct: 178 PKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGPKPKPGPPQPWWPIP 230
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/74 (28%), Positives = 23/74 (31%)
Frame = -1
Query: 533 RGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPPXPXTXXWXPPXXXTCXXRXXXG 354
+G R SE P P RA S P PPP P + PP
Sbjct: 3 KGKRQSESFWRVEPPPPPPATRARPPCSSAHLLPPPPPPPPPPPYVPPHLLPPSPAPQQW 62
Query: 353 YXXSXGSTPPSTXA 312
Y PP T A
Sbjct: 63 YDHPPNYHPPHTPA 76
>02_04_0242 + 21210062-21210541
Length = 159
Score = 29.1 bits (62), Expect = 5.3
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +1
Query: 415 GXGGGVGGXVXXDEXAXARGXAGXVXGAXPGPRSLTRGPRSXGXG 549
G GGG D RG AG G GPR R R G G
Sbjct: 4 GRGGGSPPPSLPDLAGGGRGEAGGGGGDGAGPRRRRRARRGRGGG 48
>03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797
Length = 442
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 787 GGXXGXXXXPPXXXPPPXXGAXXPXGXXRGGGAXGGXXGNXA 662
GG G P P P G G GGG GG G A
Sbjct: 7 GGGGGEMLAPLMEGPDPESGDGEGGGGGGGGGGGGGGGGRGA 48
>08_01_0193 +
1599970-1600503,1601488-1601919,1602010-1602147,
1602532-1602600
Length = 390
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 660 AAXLPXXPPXAPPPLXXPXGXXAP 731
AA P PP PPP P G AP
Sbjct: 14 AAAAPPPPPPPPPPPLPPRGSPAP 37
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = -1
Query: 548 PXPXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPPXPXTXXWXPP 390
P P P + P P P P+ S T PTP P T PP
Sbjct: 292 PTPKPNPPPTYKPQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTPTPP 344
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = -1
Query: 548 PXPXDRGPRVSERGPGXA--PXTXPAXPRAXAXSSXXT*PPTPPPXPXTXXWXPP 390
P P P V+ P A P P P SS PP PPP P PP
Sbjct: 48 PPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPP-PPLPPPPPPPAASPPP 101
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 660 AAXLPXXPPXAPPPLXXPXGXXAPXSGGGXXXGGXXXXPXXPP 788
AA P PP A PP P G P G P PP
Sbjct: 324 AAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 379 VXXXGGXHXXVXGXGGGVGGXVXXDEXAXARGXAGXVXGA-XPGPRSLTRG 528
V GG G GGG GG +E A G G G P P+ + +G
Sbjct: 188 VRVAGGGGGGGGGGGGGAGGGGGGEEGAGKDGWGGSNLGKDLPTPKEICQG 238
>02_02_0307 -
8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 672 PXXPPXAPPPLXXPXGXXAPXSGGGXXXGGXXXXPXXPP 788
P PP A P G A GG GG P PP
Sbjct: 145 PPPPPPASPDAAKTPGSPAGGGGGVGAGGGGGEEPMYPP 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,567,428
Number of Sequences: 37544
Number of extensions: 254214
Number of successful extensions: 1871
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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