Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F21
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    35   0.073
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    34   0.17 
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    34   0.17 
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     34   0.17 
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     34   0.17 
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    33   0.39 
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.1  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    30   2.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.7  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   6.3  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   6.3  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    29   6.3  
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    29   6.3  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    29   6.3  

>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 35.1 bits (77), Expect = 0.073
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G   A    GG A PG       P   G     G    PGAP      P    PA  P
Sbjct: 224 PSGAPGAPGQSGGSALPGPPGPAGSPGRSGQPGSNGNVGAPGAPGQVVDVPGAPGPAGPP 283

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 284 ----GPPGP 288


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G   A    GG A PG       P   G     G    PGAP      P    PA  P
Sbjct: 189 PSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPP 248

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 249 ----GSPGP 253


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G   A    GG A PG       P   G     G    PGAP      P    PA  P
Sbjct: 189 PSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPP 248

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 249 ----GSPGP 253


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G   A    GG A PG       P   G     G    PGAP      P    PA  P
Sbjct: 189 PSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPP 248

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 249 ----GSPGP 253


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 23/69 (33%), Positives = 23/69 (33%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G   A    GG A PG       P   G     G    PGAP      P    PA  P
Sbjct: 189 PSGAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPP 248

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 249 ----GSPGP 253


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 22/69 (31%), Positives = 23/69 (33%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G   A    GG + PG       P   G     G    PGAP      P    PA  P
Sbjct: 190 PSGAPGAPGQSGGASLPGPPGPAGPPGPSGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPP 249

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 250 ----GPPGP 254


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/69 (30%), Positives = 22/69 (31%)
 Frame = +2

Query: 653 PXGGXVARRXXGGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXP 832
           P G        GG + PG       P   G     G    PGAP      P    PA  P
Sbjct: 186 PSGAPGVPGQTGGASLPGPPGPAGPPGPSGQPGSNGNAGAPGAPGQVVDVPGTPGPAGPP 245

Query: 833 XXXXGXPGP 859
               G PGP
Sbjct: 246 ----GPPGP 250


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -3

Query: 855 PGXPXXXXGXXAGXPPXGXXXXXXGAPGSXXXPPXXXXPXXLGRXXXXXXPGGAXPP 685
           PG P    G     PP G      G P     PP    P   G       PGG  PP
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPPP 771


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -3

Query: 855 PGXPXXXXGXXAGXPPXGXXXXXXGAPGSXXXPPXXXXPXXLGRXXXXXXPGGAXPP 685
           PG P    G     PP G      G P     PP    P   G       PGG  PP
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPPP 771


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = -3

Query: 855 PGXPXXXXGXXAGXPPXGXXXXXXGAPGSXXXPPXXXXPXXLGRXXXXXXPGGAXPP 685
           PG P    G     PP G      G P     PP    P   G       PGG  PP
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPP--PPPPPGGLPPISGGPPPPPPPPGGCPPP 354


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +2

Query: 686 GGXAPPGXXXXXXRPXXXGXXXXGGXXXXPGAPXXXXXXPXGGXPAXXPXXXXGXPG 856
           G   PPG       P   G     G    PGAP        GG     P    G PG
Sbjct: 208 GSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPGPPGPPG 264


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -1

Query: 542 PXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPP 420
           P    PR    GPG  P   P+ P A   S     PP PPP
Sbjct: 348 PPPPPPRYPSAGPGMYPPPPPSRPPA-PPSGHGMIPPPPPP 387


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -1

Query: 542 PXDRGPRVSERGPGXAPXTXPAXPRAXAXSSXXT*PPTPPP 420
           P    PR    GPG  P   P+ P A   S     PP PPP
Sbjct: 358 PPPPPPRYPSAGPGMYPPPPPSRPPA-PPSGHGMIPPPPPP 397


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 648 GSRRAAXLPXXPPXAPPPLXXPXGXXAPXSGGG 746
           G R+A   P   P APPP        AP  GGG
Sbjct: 775 GGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 648 GSRRAAXLPXXPPXAPPPLXXPXGXXAPXSGGG 746
           G R+A   P   P APPP        AP  GGG
Sbjct: 775 GGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 648 GSRRAAXLPXXPPXAPPPLXXPXGXXAPXSGGG 746
           G R+A   P   P APPP        AP  GGG
Sbjct: 775 GGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 648 GSRRAAXLPXXPPXAPPPLXXPXGXXAPXSGGG 746
           G R+A   P   P APPP        AP  GGG
Sbjct: 775 GGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 648 GSRRAAX-LPXXPPXAPPPLXXPXGXXAPXSGGGXXXG 758
           GS  AA  LP  PP  P P+    G  AP  G G   G
Sbjct: 54  GSYAAAPALPPPPPPPPAPIGGGAGYAAPFGGPGPVGG 91


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 648 GSRRAAX-LPXXPPXAPPPLXXPXGXXAPXSGGGXXXG 758
           GS  AA  LP  PP  P P+    G  AP  G G   G
Sbjct: 54  GSYAAAPALPPPPPPPPAPIGGGAGYAAPFGGPGPVGG 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,667,784
Number of Sequences: 27780
Number of extensions: 181824
Number of successful extensions: 967
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)