Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_F18
(920 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 171 3e-41
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 120 5e-26
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 92 2e-17
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 4e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 3e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 55 2e-06
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 51 4e-05
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 44 0.004
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.051
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.089
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 38 0.48
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 36 1.5
UniRef50_P08621 Cluster: U1 small nuclear ribonucleoprotein 70 k... 36 1.9
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 5.9
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 5.9
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.9
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 171 bits (415), Expect = 3e-41
Identities = 91/120 (75%), Positives = 93/120 (77%), Gaps = 4/120 (3%)
Frame = +2
Query: 527 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLEAPSCALLFRP 706
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRR PLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 707 CRLRDTCPPFSLREAWRFLIAHAVGISVGV-GRRSSW-VCAXPPFS-RXWXYPV-LRLSP 874
CRL DTCPPFSLREAWRFLIAHAVGISV SW VC PPFS YPV + LSP
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPVTIVLSP 121
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 120 bits (289), Expect = 5e-26
Identities = 70/116 (60%), Positives = 75/116 (64%)
Frame = +2
Query: 359 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 538
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 539 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLEAPSCALLFRP 706
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RR PL APSCALLF P
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLP 129
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 92.3 bits (219), Expect = 2e-17
Identities = 44/54 (81%), Positives = 46/54 (85%)
Frame = +2
Query: 545 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLEAPSCALLFRP 706
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRR PL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 4e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -2
Query: 535 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 422
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 3e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 335 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 502
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 55.2 bits (127), Expect = 2e-06
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +2
Query: 434 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 607
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 608 IDAQVRGGETRQDYKDTRRXPLEAPSCALLFRP 706
I Q + +T+ +YK T PL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 51.2 bits (117), Expect = 4e-05
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 685 VRSPVPTLPLTGYLSAFLPSGSVA 756
+RSPVPTLPLTGYLSAFLPSGSVA
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVA 24
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 44.4 bits (100), Expect = 0.004
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 801 RPTPTEIPTA*AMRKR-HASRREKGGQVSRKRQGRNRRAHEGASRGXRLVSL*SCRVSPP 625
RP P+ ++ + K + +K QVS KRQGRNRRAHEGA+ SL PP
Sbjct: 38 RPKPSRDTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPP 97
Query: 624 LT 619
LT
Sbjct: 98 LT 99
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.004
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 454 HSKAVIRLSTESGDNAGKNM 513
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.051
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3
Query: 333 SALMNRPTRGERRFAYW 383
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.089
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -3
Query: 405 ERGSGRAPNTQTASPRALADSLMQ 334
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 37.5 bits (83), Expect = 0.48
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 147 MIRYIDEFGQTTTRMQ 194
MIRYIDEFGQTTTRMQ
Sbjct: 349 MIRYIDEFGQTTTRMQ 364
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 35.9 bits (79), Expect = 1.5
Identities = 34/91 (37%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = +2
Query: 620 VRGGETRQDYKDTRRXPLEAPSCALLFRPCRLRDTCPPFSLREAWRFLIAHAVGISVGVG 799
VR GETRQD K P P R PPFSL A ++H+ +
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSL--AGSVALSHSSHSGISAR 80
Query: 800 RRS---SW-VCAXPPFS-RXWXYPV-LRLSP 874
RS SW V PPFS YPV + LSP
Sbjct: 81 CRSFAPSWAVSKNPPFSPTAAPYPVTVHLSP 111
>UniRef50_P08621 Cluster: U1 small nuclear ribonucleoprotein 70 kDa;
n=47; Eumetazoa|Rep: U1 small nuclear ribonucleoprotein
70 kDa - Homo sapiens (Human)
Length = 437
Score = 35.5 bits (78), Expect = 1.9
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 257 SRSRDRRRR 265
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 5.9
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -2
Query: 544 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 422
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 5.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 216 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 383
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.9
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 296 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 132
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,609,279
Number of Sequences: 1657284
Number of extensions: 15478952
Number of successful extensions: 43495
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 41324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43441
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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