Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F18
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369...    31   1.3  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    29   3.9  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.1  
02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532     28   9.1  

>11_04_0359 +
           16735204-16735676,16736597-16736647,16736860-16736934,
           16737011-16737062,16737147-16737280,16737397-16737511,
           16737665-16737751,16737855-16737903,16738351-16738435,
           16738641-16738715,16738848-16739029,16739905-16739969
          Length = 480

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 840 RLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRNR 694
           RL GG     L    +  E+  A A R+R    R  GG+V+R+R+ R R
Sbjct: 3   RLRGGRGDPALGDAASGDEVAAAAARRERTFGARRCGGRVTRRRRVRAR 51


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 560 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRXPLEAPSCALLFRP 706
           CWR  +        T  D Q    +    +KD    P + PSC L+F P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIP 331


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 392 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 547
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 341 NESAN---ARGEAVCVLGALPLPRSLTRCAR 424
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>02_02_0496 + 10958561-10958615,10959077-10959121,10959273-10959532
          Length = 119

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 840 RLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRNRRAHEG-ASRGX 664
           R   G AHT + RR TP  +  A     RHAS  E     +R+R G   R   G A+R  
Sbjct: 28  RCRTGTAHTSITRRSTPLPVCLALPAGCRHAS--EWMVHRARQRVGEGVRLDNGLANRDW 85

Query: 663 RLVS 652
            L S
Sbjct: 86  YLPS 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,996,460
Number of Sequences: 37544
Number of extensions: 472581
Number of successful extensions: 1390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)