Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_F18
(920 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1) ribonucleopro... 36 0.27
X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA) ... 36 0.27
X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for ... 36 0.27
X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for ... 36 0.27
X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for ... 36 0.27
M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen... 36 0.27
M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small ... 36 0.27
BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear ribonucle... 36 0.27
AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein pr... 36 0.27
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 33 1.9
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 33 1.9
>X84841-1|CAA59278.1| 437|Homo sapiens 68 kDa (U1)
ribonucleoprotein protein.
Length = 437
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 257 SRSRDRRRR 265
>X07401-1|CAA30303.1| 285|Homo sapiens hU1-70K protein (286 AA)
protein.
Length = 285
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 45 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 104
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 105 SRSRDRRRR 113
>X06814-1|CAA29963.1| 233|Homo sapiens protein ( Human mRNA for
hU1-70K small nuclear RNP protein (RNP12). ).
Length = 233
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 12 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 71
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 72 SRSRDRRRR 80
>X06812-1|CAA29961.1| 301|Homo sapiens protein ( Human mRNA for
hU1-70K snRNP protein (RNP8). ).
Length = 301
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 148 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 207
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 208 SRSRDRRRR 216
>X04654-1|CAA28352.1| 614|Homo sapiens protein ( Human mRNA for U1
RNA-associated 70K protein. ).
Length = 614
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 374 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 433
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 434 SRSRDRRRR 442
>M57939-1|AAA36572.1| 437|Homo sapiens ribonucleoprotein antigen
protein.
Length = 437
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 257 SRSRDRRRR 265
>M22636-1|AAA03001.1| 437|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein 70 kd protein mRNA, complete
cds. ).
Length = 437
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 257 SRSRDRRRR 265
>BC001315-1|AAH01315.1| 437|Homo sapiens small nuclear
ribonucleoprotein 70kDa polypeptide (RNP antigen)
protein.
Length = 437
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 197 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 256
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 257 SRSRDRRRR 265
>AL117507-1|CAB55969.1| 341|Homo sapiens hypothetical protein
protein.
Length = 341
Score = 35.5 bits (78), Expect = 0.27
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 876 GGLRRSTGXXXXRLNGGXAHTQLERRPTPTEIPTA*AMRKRHASRREKGGQVSRKRQGRN 697
GG RR R +G ++ + RP P+ +P R R RRE+ + ++R+ R
Sbjct: 101 GGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKERERRR 160
Query: 696 RRAHEGASR 670
R+ + R
Sbjct: 161 SRSRDRRRR 169
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -2
Query: 736 ERRTGIP*AAGSEQESARGSFQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 557
ER G+ GS+Q S+ G +P + GFA+ + +F +A GG + +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630
Query: 556 RPFYGSWP 533
P Y S P
Sbjct: 631 TPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 32.7 bits (71), Expect = 1.9
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -2
Query: 736 ERRTGIP*AAGSEQESARGSFQGXTPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 557
ER G+ GS+Q S+ G +P + GFA+ + +F +A GG + +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631
Query: 556 RPFYGSWP 533
P Y S P
Sbjct: 632 TPSYLSVP 639
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,403,750
Number of Sequences: 237096
Number of extensions: 2462159
Number of successful extensions: 7383
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7375
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -