Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F17
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   5.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   5.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 65  LLCVEDLKDCVSNIESTFDRTFIVLSLITTAVGVKIIVKLFRFY 196
           + C E   D V NI       F  ++LI   VG+  +  L  FY
Sbjct: 217 ICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLV-FY 259


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 71  CVEDLKDCVSNIESTFDRTFIVLSLITTAVGVKIIVKLFRFY 196
           C E   D   NI       F  ++LI   VG+  +  L  FY
Sbjct: 232 CTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLV-FY 272


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 537 LVRLLRGYRNGESTFKISSKSVEV 466
           +++LLR ++NG   F +  K +E+
Sbjct: 72  IMKLLRTFKNGNFDFDMIVKQLEI 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,347
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)