Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F16
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           37   0.024
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.2  
03_06_0149 - 31987183-31987630,31987813-31987874                       29   1.3  
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    31   1.6  
12_02_1188 + 26801833-26802225                                         29   6.4  
04_03_1035 - 21887562-21890030                                         29   6.4  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.4  
01_03_0308 - 14883728-14884120                                         28   8.4  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 717 RKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETPG 610
           R R   RR  GG+V+G+   R+RR   GA++GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 534 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIP 680
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 29.1 bits (62), Expect(2) = 1.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 723 AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGETP 613
           A+ + H   R +   +  +R+GR R AHEG   G  P
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIGAEP 112



 Score = 20.6 bits (41), Expect(2) = 1.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 813 RATGRAERGFVHTAQLGAXDLH 748
           R  GR ERG V  A   A D H
Sbjct: 21  RIHGREERGDVAAAGEDAADAH 42


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 28/88 (31%), Positives = 36/88 (40%)
 Frame = -2

Query: 648 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 469
           R H+  F G   G    L G +   LS      R GGG     P+TR   G     G + 
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271

Query: 468 TCSFLRYPLILWITVLPPLSELIPLAAA 385
           T S  R  +     + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 687 GGQVSGKRQGRNRRAHEGAFQGETPGIFIVLSG 589
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>04_03_1035 - 21887562-21890030
          Length = 822

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 753 LHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAFQGE 619
           ++R  +P    +  + A RR+ GG  S       R  HE AF  E
Sbjct: 493 VYRASLPDGREVAIKRAERRDTGGPSSSSAAAARRVDHEAAFVSE 537


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 346 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 501
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 295 NESAN---ARGEAVCVLGALPLPRSLTRCAR 378
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_03_0308 - 14883728-14884120
          Length = 130

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 593 DRTIKIPGVSPWKAPSCALLFRP---CRLPDTCPPFSLREAWR 712
           +R  +I G    + PS A L+R    C    +CPP    E WR
Sbjct: 65  ERAPEIGGAVAGRKPSLAELWRRHRRCSCNSSCPPIEREERWR 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,546,601
Number of Sequences: 37544
Number of extensions: 525748
Number of successful extensions: 1553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)