Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_F15
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 151 1e-37
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 151 2e-37
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 27 3.5
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 4.7
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 8.2
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 151 bits (366), Expect = 1e-37
Identities = 73/155 (47%), Positives = 101/155 (65%), Gaps = 3/155 (1%)
Frame = +3
Query: 267 GLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMDLASGHVAA 446
GL+GEDP NL+PFLAQVA+G++ L VFG DY++ DGT IRDYIHV+DLA GH+AA
Sbjct: 195 GLLGEDPLGIPNNLLPFLAQVAIGRREKLLVFGDDYDSHDGTPIRDYIHVVDLAKGHIAA 254
Query: 447 LNLLSQTHIRLKVY---NLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDISAMWAD 617
LN L++ + +Y NLGTGKG SV ++ + F + +P + V RR GD+ + A
Sbjct: 255 LNYLNKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVGKDLPYEVVGRRTGDVLNLTAS 314
Query: 618 TSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGYR 722
+ A EL W +L+I + C D W+W NP G++
Sbjct: 315 PNRANSELKWKAELSITDACRDLWKWTIENPFGFQ 349
Score = 58.8 bits (136), Expect = 9e-10
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +1
Query: 22 TIGNSLRFTICYQMVFSSSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLK 189
T+ N +R +VFSSS TVYG+ +PI E+ P TN YG+TKY IE ++K
Sbjct: 111 TLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDP-TNPYGKTKYAIENIIK 169
Query: 190 DLSAADDKWNIISLRXFQP 246
DL +D+ W LR F P
Sbjct: 170 DLHTSDNTWRGAILRYFNP 188
Score = 29.9 bits (64), Expect = 0.50
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 236 YFNPVGAHPSG 268
YFNP+GAHPSG
Sbjct: 185 YFNPIGAHPSG 195
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 151 bits (365), Expect = 2e-37
Identities = 73/158 (46%), Positives = 97/158 (61%)
Frame = +3
Query: 267 GLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMDLASGHVAA 446
G +GEDP NL+P++AQVA+G+ L VFG DY T DGT IRDYIHV DLA HVAA
Sbjct: 196 GELGEDPLGIPNNLLPYIAQVAVGRLDHLNVFGDDYPTSDGTPIRDYIHVCDLAEAHVAA 255
Query: 447 LNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDISAMWADTSL 626
L+ L Q + + +NLG+G G +V +++N F + +P K RR GD+ + A+ +
Sbjct: 256 LDYLRQHFVSCRPWNLGSGTGSTVFQVLNAFSKAVGRDLPYKVTPRRAGDVVNLTANPTR 315
Query: 627 AKEELGWSTQLTIEEMCTDFWRWQTMNPDGYRKKTKKT 740
A EEL W T +I E+C D WRWQ P G+ KT
Sbjct: 316 ANEELKWKTSRSIYEICVDTWRWQQKYPYGFDLTHTKT 353
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +1
Query: 64 VFSSSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISL 231
VFSSS TVYG+P +PI E+ P T+ YGRTK FIE +++D + + N L
Sbjct: 126 VFSSSATVYGDPTRPGGTIPIPESCPREG-TSPYGRTKLFIENIIEDETKVNKSLNAALL 184
Query: 232 RXFQP 246
R F P
Sbjct: 185 RYFNP 189
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +2
Query: 236 YFNPVGAHPSG 268
YFNP GAHPSG
Sbjct: 186 YFNPGGAHPSG 196
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 488 QSGYRQRSFSQRISERIRK--SHKSQSATQVRRSKTWRHQRH 607
Q G R + +S R + S +S + ++RR +W+H ++
Sbjct: 31 QKGARYNRYVDDVSSRRDRHDSFRSHESNKIRRDNSWKHDKY 72
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 377 VIVGSENGEHRFLPESNLREEWHEVGELLSRVFADQALK 261
+++G+E PE+ L +HE G L +F A++
Sbjct: 508 ILMGAERKSAFITPENKLMTAYHEGGHALVALFTKNAMR 546
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 527 SERIRKSHKSQSATQVRRSKTWRHQRH 607
S+R R+S K +S TQ++ S +H+RH
Sbjct: 57 SDRRRQSRKKKS-TQIQASDEMKHRRH 82
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 640 SSSLASEVSAHMALMSPSLRSTYLSGTLAFVTLSNTFTNSLTETPL 503
SSSLAS +L S S S+ L+ + T S T T+S T + L
Sbjct: 136 SSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSL 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,189
Number of Sequences: 5004
Number of extensions: 76532
Number of successful extensions: 248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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