Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F15
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.53 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.6  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 736 KPRLSLTGRVXXLIXIFIXXN*SNFIQLCDNTTIYNK 846
           + R S++G V  LI I +  + SNFI +    ++Y+K
Sbjct: 164 RTRWSISGTVFDLINIHLFHDASNFIAMETFPSVYSK 200


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +2

Query: 338 EETCAHRFRNRL*HSRWNRYSRLHTR------HGFG*RACSRVKFTQPNPYQTKGLQSGY 499
           E +C+ R RNR    +  RY +LH             +  SR +  + N Y+ +     Y
Sbjct: 1   ERSCS-RDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKY 59

Query: 500 RQRSFSQRISERIRKSHKSQ 559
           R+RS  +   +R R+  K +
Sbjct: 60  RERSKERSRDKRERERSKER 79


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +2

Query: 338 EETCAHRFRNRL*HSRWNRYSRLHTR------HGFG*RACSRVKFTQPNPYQTKGLQSGY 499
           E +C+ R RNR    +  RY +LH             +  SR +  + N Y+ +     Y
Sbjct: 1   ERSCS-RDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKY 59

Query: 500 RQRSFSQRISERIRKSHKSQ 559
           R+RS  +   +R R+  K +
Sbjct: 60  RERSKERSRDKRERERSKER 79


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 752 NDNLGFLGLFPVSVGIHCLPSPEIR 678
           ND LGFL   P ++G     S  I+
Sbjct: 261 NDRLGFLTFCPTNLGTTVRASVHIK 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,246
Number of Sequences: 438
Number of extensions: 5831
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)