Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F09
         (988 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.33 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 629  PXPPPXPXPXPRRPAXPXPPXXPPXA 706
            P PPP P   P  P+ P  P  PP A
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSA 1730



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 574  PXRPXPGXGPPPXPPXPXAXAXPXTXPXPQAP 669
            P  P P    PP P  P   A P + P P  P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +1

Query: 574 PXRPXPGXGPPPXPPXPXAXAXPXTXPXP 660
           P  P  G  PPP PP   A A P   P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 635 PPPXPXPXPRRPAXPXPPXXPPXA 706
           PPP P P     A P PP  PP A
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 583 PXPGXGPPPXPPXPXAXAXPXTXPXPQAP 669
           P P  G PP PP P   A     P P  P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
 Frame = +1

Query: 574 PXRPXPGX---GPPPXPPXPXAXAXPXT---XPXPQA 666
           P  P PG    GPPP PP P A +   +    P PQA
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQA 799



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 629 PXPPPXPXPXPRRPAXPXPPXXPPXA 706
           P P P P P P     P PP  P  A
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVA 771


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 574  PXRPXPGXGPPPXPPXPXAXAXPXTXPXPQAP 669
            P  P P  G PP P  P A A P   P  +AP
Sbjct: 1217 PPVPTPSAGLPPVP-VPTAKAPPVPAPSSEAP 1247



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 635  PPPXPXPXPRRPAXPXPPXXPP 700
            PPP P P    P+ P P   PP
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPP 1084



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 629  PXPPPXPXPXPRRPAXPXPPXXPP 700
            P PPP   P   +P+   PP  PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 635 PPPXPXPXPRRPAXPXPPXXP 697
           PPP P P    P+ P PP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 635 PPPXPXPXPRRPAXPXPPXXPP 700
           PPP P P    P    PP  PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 598 GPPPXPPXPXAXAXPXTXPXPQAP 669
           G PP PP P     P   P P  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -1

Query: 649 GXGGXPXXXXXXXXXXGXDRGXAXGGXGGXGGAXAGXG 536
           G GG P          G   G   GG GG GG   G G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,698
Number of Sequences: 5004
Number of extensions: 12279
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)