Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F08
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   144   2e-35
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   3.6  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   3.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   4.8  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    26   6.3  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  144 bits (348), Expect = 2e-35
 Identities = 79/171 (46%), Positives = 110/171 (64%), Gaps = 1/171 (0%)
 Frame = +3

Query: 129 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG-DIQIEGFNPSAEEADEGTD 305
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG D+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 306 SAVESGVXIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKV 485
              E+   +V + RL  T +F DKKSY  Y+K YMK + A+L+E  P++V V + N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 486 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFXKHGLXQE 638
           +K IL  FK+  F+ GESMD D MV +M YR+ DG   P M+F K GL  E
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSE 166


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 342 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVE 458
           ++L+E   F ++K  T+YLK   + L  K +   PD VE
Sbjct: 95  NKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVE 131


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 219 TGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVXIVLNHRLVETYAFGDKKSYTLYL 398
           T +   R  GD+     NP   E +  T S  ++      N + ++ Y   ++KS    +
Sbjct: 133 TKKATERGWGDLVNSAANPDVAENEGNTPSGAQTPAAEEENVKTLDEY-LSERKSAAKPV 191

Query: 399 KDYMKKL--VAKLEEKAPDQV 455
              ++KL    K+E+ AP+++
Sbjct: 192 GRTVEKLENATKVEKSAPEEL 212


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 166  ISSPVIMSL*IFILMDWRRLKII 98
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 188 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 78
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 600 VFAYHQSLYIPSWQPC-HHN 544
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 231 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVXIVLNHRLVETYAFGD 374
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,176
Number of Sequences: 5004
Number of extensions: 51416
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)