Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F08
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...   111   7e-25
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109...    29   6.7  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    28   8.8  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    28   8.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score =  111 bits (267), Expect = 7e-25
 Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 3/172 (1%)
 Frame = +3

Query: 129 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 299
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 300 TDSAVESGVXIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMN 479
            D      V IV   RL E   F DKK +  ++K Y+K L AKL+    ++ E  K N+ 
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115

Query: 480 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFXKHGLXQ 635
              K +LG+ K+LQFF GESM  DG +    Y+  DG   P  ++  HGL +
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKE 165


>02_05_1057 +
           33809982-33810366,33810436-33810687,33810727-33810926,
           33811021-33811122
          Length = 312

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +3

Query: 165 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVXIVLN 341
           +FS       VDE I +E+    +    G+I ++GF         G D+AVE  +  V  
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158

Query: 342 HRLVETYAFGDKKS--YTLYLKD 404
            R+ E      K S  Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 342 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKVMKDILGRFKELQ 521
           H L+   A  D  S +L  ++++   V   +E+A  Q+EV K  +    K+I     EL 
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236

Query: 522 FFTGE 536
             + E
Sbjct: 237 VLSKE 241


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 444 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLA 346
           APS  +   + SYSL GT   +   RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,583
Number of Sequences: 37544
Number of extensions: 314295
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)