Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_F08
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 144 6e-35
U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical pr... 33 0.28
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 2.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 2.6
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.5
U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 144 bits (350), Expect = 6e-35
Identities = 76/179 (42%), Positives = 111/179 (62%), Gaps = 9/179 (5%)
Frame = +3
Query: 129 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 302
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE D+G+
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGS 60
Query: 303 DSAVESGVXIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVXKTNM 476
D VE G+ IVLNH+LVE + D + Y+K +MK ++ +E+ D+ V+ K +
Sbjct: 61 DEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKI 120
Query: 477 NKVMKDILG--RFKELQFFTGESM---DCDGMVAMMEYRDFDGTQIPIMMFXKHGLXQE 638
+ +L RFK L FF GE +G VA++EYRD DGT++P +M K + +E
Sbjct: 121 QGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEE 179
>U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical
protein EEED8.16 protein.
Length = 590
Score = 33.1 bits (72), Expect = 0.28
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +3
Query: 162 EMFSDTYKMKLVDEVIYEVTG-----RLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGV 326
E+ S TY +K+ E +++ G RL+ +E S D+ +
Sbjct: 343 ELTSHTYSLKVGGERVWDYAGDNYVHRLIENGADGKLVEYQRESNASFDDKNQKGGDKLE 402
Query: 327 XIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVE 458
I L + L+ T D++ Y L+ M++ ++K+E+ A QVE
Sbjct: 403 GIKLEYTLLLTSQLEDQRKYFEGLRHDMEQTMSKMEKTAYAQVE 446
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 357 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKVMKDILGRFKELQ 521
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 357 TYAFG--DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKVMKDILGRFKELQ 521
T+ FG D++ Y++ +KD KKL + E+ + TN K + G+ K L+
Sbjct: 11103 TFNFGQKDQEQYSMVMKDVSKKLARQNAEEIQSGKLIPTTNEEKTGLALTGKNKNLK 11159
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 375 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKVMKDILGRFKELQFFTGESMDCDG 554
+K+Y YL+++MK LVA + EK ++ V T + K + I+ E + E++ C
Sbjct: 754 EKTYKQYLREFMKSLVALMSEKKA-KMTVQNTAL-KSIPTIIDLLNESDSVSPENL-CGF 810
Query: 555 MVAMM 569
+V +M
Sbjct: 811 IVDLM 815
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 375 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKVMKDILGRFKELQFFTGESMDCDG 554
+K+Y YL+++MK LVA + EK ++ V T + K + I+ E + E++ C
Sbjct: 754 EKTYKQYLREFMKSLVALMSEKKA-KMTVQNTAL-KSIPTIIDLLNESDSVSPENL-CGF 810
Query: 555 MVAMM 569
+V +M
Sbjct: 811 IVDLM 815
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 375 KKSYTLYLKDYMKKLVAKLEEKAPDQVEVXKTNMNKVMKDILGRFKELQFFTGESMDCDG 554
+K+Y YL+++MK LVA + EK ++ V T + K + I+ E + E++ C
Sbjct: 754 EKTYKQYLREFMKSLVALMSEKKA-KMTVQNTAL-KSIPTIIDLLNESDSVSPENL-CGF 810
Query: 555 MVAMM 569
+V +M
Sbjct: 811 IVDLM 815
>U40958-3|ABQ13075.1| 219|Caenorhabditis elegans Hypothetical
protein F09F9.5 protein.
Length = 219
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 434 FQFCY*FFHIVFEVQCVGFLVTEGVCF 354
+Q C+ F H+ +GF GVCF
Sbjct: 53 YQTCFGFMHVKIATCSIGFFALLGVCF 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,006,356
Number of Sequences: 27780
Number of extensions: 281331
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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