Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F07
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   4.5  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 676 PPPXPXXPPPPPG 714
           P P P  P PPPG
Sbjct: 205 PEPVPSTPYPPPG 217



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 474 GXXLXXXGPPPXPXPAXPXPXXXGXGGXGXXPPXGGXP 587
           G  L   GP P P    P P   G  G        G P
Sbjct: 197 GYGLRNYGPEPVPSTPYPPPGSLGSMGVSVPCGTSGNP 234


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/58 (25%), Positives = 15/58 (25%)
 Frame = +1

Query: 550 GGXXXPPPGGXXPFPXXXGXPPEKAXXPXGXPXGXDPSXXPXPPPXPXXPPPPPGXPP 723
           GG   P P      P      P     P       D    P P P    P  P G  P
Sbjct: 697 GGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 15/58 (25%), Positives = 15/58 (25%)
 Frame = +1

Query: 550 GGXXXPPPGGXXPFPXXXGXPPEKAXXPXGXPXGXDPSXXPXPPPXPXXPPPPPGXPP 723
           GG   P P      P      P     P       D    P P P    P  P G  P
Sbjct: 589 GGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNP 646


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 770 GPRRGXPPXGXGAGXXGGXPGGG 702
           G R+G PP   G    GG P  G
Sbjct: 55  GLRQGIPPHHYGGPPSGGQPPQG 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.151    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,671
Number of Sequences: 336
Number of extensions: 4664
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)