Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F07
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.079
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.74 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.079
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +1

Query: 610 PPEKAXXPXGXPXGXDPSXXPXPPPXPXXPPPPPGXPPXXPAPXP 744
           P   A  P   P     +     PP P   PPP G P   P+  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 28.7 bits (61), Expect = 0.079
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
 Frame = +1

Query: 661 SXXPXPPPXPXXPPPPP--GXPPXXPAPXPXGGXPRRGP 771
           S  P P P P   P  P  G PP      P GG P   P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.2 bits (55), Expect = 0.42
 Identities = 14/52 (26%), Positives = 18/52 (34%)
 Frame = +1

Query: 616 EKAXXPXGXPXGXDPSXXPXPPPXPXXPPPPPGXPPXXPAPXPXGGXPRRGP 771
           +++  P     G  PS    P       PP P   P  P   P G  P + P
Sbjct: 11  QQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGP--PPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 495 GPPPXPXPAXPXPXXXGXGGXGXXPPXGGXP 587
           GP P P  +   P           PP GG P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = -3

Query: 497 APXXEXXSPGVGXPX-PXXGXPPXXPRAXPPXPAP 396
           +P     +P  G P  P  G PP  P   PP   P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 15/56 (26%), Positives = 16/56 (28%)
 Frame = +1

Query: 586 PFPXXXGXPPEKAXXPXGXPXGXDPSXXPXPPPXPXXPPPPPGXPPXXPAPXPXGG 753
           P     G  P     P     G  P+    PPP    P  PP   P      P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQNPSQMMISPASG 70



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 767 PRRGXPPXGXGAGXXGGXPG 708
           P+RG PP        GG PG
Sbjct: 34  PQRGSPPNPSQGPPPGGPPG 53



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +2

Query: 386 PPPGAXGXXAGPGGGXGGRXXXEXGXQP-PGXXPPXXGPPSXXXARGP 526
           P  GA G    P          + G  P P   PP  GPP    ++ P
Sbjct: 16  PSSGAPGPQPSPHQSPQA---PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +1

Query: 565 PPPGGXXPFPXXXGXPPEKAXXPXGXPXGXDPSXXP 672
           P P      P     P      P G P G  PS  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 679 PPXPXXPPPPP 711
           PP P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 600 VXGEXGXPPXGGXXPPPPPXXPXAXGP 520
           V G+   PP     P PPP  P + GP
Sbjct: 331 VLGDSDTPPK----PAPPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = -2

Query: 612  GXPXVXGEXGXPPXGGXXPPPPP 544
            G   V      P  G   PPPPP
Sbjct: 1841 GRRSVGSARNIPVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.151    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,967
Number of Sequences: 438
Number of extensions: 11605
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)