Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F06
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.8  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.8  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.8  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.8  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   6.5  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   8.6  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   8.6  

>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 489
           L +W    L FSK++   Q ++CL  F   L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 489
           L +W    L FSK++   Q ++CL  F   L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 489
           L +W    L FSK++   Q ++CL  F   L Q +
Sbjct: 83  LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 117


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 388 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 489
           L +W    L FSK++   Q ++CL  F   L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 399 DTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFY 506
           + +   +K  Y++TG  V ++ L  I   DDL  +Y
Sbjct: 112 EARLQAVKLAYQKTGRIVYDAPLQNIHNWDDLYNYY 147


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = +3

Query: 552 MDLPKNLHVQKDYVRFHPDTDTLFNGVSAFPKSSTIVTGLKARKKYEGYNAKRKWP*FNT 731
           +DLP    V  + + +  +   L NG+   PKS   V  LK ++     N    W  F++
Sbjct: 109 IDLPFVSQVAHNILVWLENLIPLSNGMDDTPKSHLKVKILKVQETLSNSNDSWLWQRFSS 168

Query: 732 CFQ*LLNYLVHVIN 773
               LLN LV  IN
Sbjct: 169 L---LLNCLVSSIN 179


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 423  ACYEETGHSVPNSLL--HTIETVDDLTEFYKTPVYTTTP 533
            ACY  + +   +  L  +T+ T    T F  TP  TTTP
Sbjct: 913  ACYNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +3

Query: 348 KICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYK-----T 512
           + C  C     S F  L +KF +  + YE    +  +SLL+   T+ ++ E  +      
Sbjct: 212 EFCQICEREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKDSSLV 271

Query: 513 PVYTTTP 533
           PVY   P
Sbjct: 272 PVYKNEP 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,504
Number of Sequences: 5004
Number of extensions: 70717
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)