Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F06
         (920 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL353621-1|CAI14610.1|  158|Homo sapiens mitochondrial ribosomal...    55   4e-07
AK025643-1|BAB15200.1|  158|Homo sapiens protein ( Homo sapiens ...    55   4e-07
AK000500-1|BAA91207.1|  158|Homo sapiens protein ( Homo sapiens ...    55   4e-07
BC032008-1|AAH32008.1|  158|Homo sapiens mitochondrial ribosomal...    54   6e-07

>AL353621-1|CAI14610.1|  158|Homo sapiens mitochondrial ribosomal
           protein L50 protein.
          Length = 158

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
 Frame = +3

Query: 201 RSHLSEQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGL 371
           R   S   ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L
Sbjct: 24  REFWSRFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSL 82

Query: 372 NGNSEFEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDA 542
             N +  +L+    KF +L    ++ GH VPNS LH +  V D+ +FY  P+   + FD 
Sbjct: 83  PSNWQDISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDE 142

Query: 543 LKLMDLPKNLHVQKDY 590
           L   +LP NL +   Y
Sbjct: 143 LSASNLPPNLKITWSY 158


>AK025643-1|BAB15200.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21990 fis, clone HEP06386. ).
          Length = 158

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
 Frame = +3

Query: 201 RSHLSEQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGL 371
           R   S   ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L
Sbjct: 24  REFWSRFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSL 82

Query: 372 NGNSEFEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDA 542
             N +  +L+    KF +L    ++ GH VPNS LH +  V D+ +FY  P+   + FD 
Sbjct: 83  PSNWQDISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDE 142

Query: 543 LKLMDLPKNLHVQKDY 590
           L   +LP NL +   Y
Sbjct: 143 LSASNLPPNLKITWSY 158


>AK000500-1|BAA91207.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20493 fis, clone KAT08512. ).
          Length = 158

 Score = 54.8 bits (126), Expect = 4e-07
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
 Frame = +3

Query: 201 RSHLSEQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGL 371
           R   S   ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L
Sbjct: 24  REFWSRFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSL 82

Query: 372 NGNSEFEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDA 542
             N +  +L+    KF +L    ++ GH VPNS LH +  V D+ +FY  P+   + FD 
Sbjct: 83  PSNWQDISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVLDFYNVPIQDRSKFDE 142

Query: 543 LKLMDLPKNLHVQKDY 590
           L   +LP NL +   Y
Sbjct: 143 LSASNLPPNLKITWSY 158


>BC032008-1|AAH32008.1|  158|Homo sapiens mitochondrial ribosomal
           protein L50 protein.
          Length = 158

 Score = 54.4 bits (125), Expect = 6e-07
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
 Frame = +3

Query: 201 RSHLSEQAQKKYPKADKKVQAAAESLAARGFLRPTKSWDPPTNIN---ETILKICATCGL 371
           R   S   ++K P   + V+   E +     LR ++++ PP ++    E+ +K      L
Sbjct: 24  REFWSRFRKEKEPVVVETVEEKKEPILVCPPLR-SRAYTPPEDLQSRLESYVKEVFGSSL 82

Query: 372 NGNSEFEALDT---KFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDA 542
             N +  +L+    KF +L    ++ GH VPNS LH +  V D+ +FY  P+   + FD 
Sbjct: 83  PSNWQDISLEDSRLKFNLLAHLADDLGHVVPNSRLHQMCRVRDVFDFYNVPIQDRSKFDE 142

Query: 543 LKLMDLPKNLHVQKDY 590
           L   +LP NL +   Y
Sbjct: 143 LSASNLPPNLKITWSY 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,619,611
Number of Sequences: 237096
Number of extensions: 2356589
Number of successful extensions: 3515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3515
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)