Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F05
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.35 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 680 IXXXPXPPPPXKKXPPXCVLXXXPPPPP 763
           I   P PPPP    PP       PPPPP
Sbjct: 757 IMGGPPPPPP----PPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect(2) = 0.35
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 692 PXPPPPXKKXPPXCVLXXXPPPPP 763
           P P P     PP   +   PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 559 PXPPPQKXRXPXXGGGXGGXPPXXXGGXXPPP 654
           P P P     P  GG     PP    G  PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect(2) = 1.3
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +2

Query: 668 QKKNIXXXPXPPPPXKKXP-PXCVLXXXPPPPP 763
           Q+K +   P PPPP    P P       PPP P
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 21.8 bits (44), Expect(2) = 0.35
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 854 PXPPXXNXXXKKKXXPPPPP 913
           P PP           PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 854 PXPPXXNXXXKKKXXPPPPP 913
           P PP           PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
 Frame = +2

Query: 617 PPPXXXGGXXPPXGGXXQKKNIXXXPXPPPPXKKXPPXCVL----XXXPPPPPXK 769
           PPP       PP G      N    P PPPP         L       PPPPP +
Sbjct: 315 PPPSRRNRGKPPIGNG--SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367



 Score = 23.4 bits (48), Expect(2) = 4.9
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 860 PPXXNXXXKKKXXPPPPP 913
           PP  N        PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPP 342



 Score = 21.4 bits (43), Expect(2) = 4.9
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
 Frame = +2

Query: 692 PXPPPPXK-KXPPXCVLXXXPPPPPXKKKK 778
           P PPP  +            PPPPP   ++
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRR 320


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +2

Query: 692 PXPPPPXKKXPPXCVLXXXPPPPP--XKKKK 778
           P PPPP    PP       PPPPP   KK+K
Sbjct: 10  PPPPPPPGFEPPS---QPPPPPPPGYVKKRK 37



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 659 PPGGGXXPPXXXGGXPPXPPP 597
           PPG    PP   G  PP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 854 PXPPXXNXXXKKKXXPPPPPG 916
           P PP        +  PPPPPG
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.149    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,986
Number of Sequences: 5004
Number of extensions: 18985
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)