Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F05
         (916 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   1.4  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    24   7.4  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
 Frame = +2

Query: 647 PPXGGXXQKKNIXXXPXPPPPXKKXPPXCVLXXXPP---PPP 763
           PP G     +++   P  PPP    PP   +   PP   PPP
Sbjct: 512 PPHGAGYDGRDLTGGPLGPPP--PPPPGGAVLNIPPQFLPPP 551



 Score = 25.0 bits (52), Expect = 3.2
 Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
 Frame = +2

Query: 560 PXPPPKXKGXHXXXXXXXVPPPXXX--GGXXP--PX-----GGXXQKKNIXXXPXPPPPX 712
           P PPP   G         +PPP         P  P       G     N    P PPPP 
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPPP 589

Query: 713 KKXPPXCVLXXXP 751
              PP   L   P
Sbjct: 590 PMGPPPSPLAGGP 602


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 656 PGGGXXPPXXXGGXPPXPPPXXG 588
           PG    PP   G   P PPP  G
Sbjct: 93  PGMPGAPPLLMGPNGPLPPPMMG 115


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.149    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,990
Number of Sequences: 2352
Number of extensions: 6942
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 99228240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)