Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F03
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 646 GGEXPXXXPEPKNXHXXXNRAKSAEP 723
           G   P   P+P+  H    R   AEP
Sbjct: 99  GNNRPVYIPQPRPPHPRLRREPEAEP 124



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 646 GGEXPXXXPEPKNXHXXXNRAKSAEP 723
           G   P   P+P+  H    R   AEP
Sbjct: 125 GNNRPVYIPQPRPPHPRLRREPEAEP 150


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +2

Query: 743 PXPPKTXXKTPXXLXXKXXPPPPKKXPXXXPPXXPP 850
           P P  +  ++P        P P +  P   PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.143    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,071
Number of Sequences: 438
Number of extensions: 3980
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)