Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F02
         (1042 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    28   2.5  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   4.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   4.4  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   7.6  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 568 DEARRTIRDLRMKYRAQAHXLLTWRRAHRTQEELVSRLQRE 690
           ++ ++ I+DL+  Y    H    W R   T +  VS++ ++
Sbjct: 165 EKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQ 205


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 553 EAHTLDEARRTIRDLRMKYRAQAHXLLTWRRAHRTQEELVSRLQREXXE 699
           E   LD+     R L+ +Y  Q     T+ R  R + +   RL+RE  E
Sbjct: 214 EKTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFRLERENRE 262


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 547  PLEAHTLDEARRTIRDLRMKYRAQAHXLLT---WRRAHRTQEELVSRL 681
            P E + ++ +  T  +L+MKYR+Q+    T    R+A ++ ++L  R+
Sbjct: 1045 PDEGNAINGSAYTAEELKMKYRSQSQFTTTPDILRKAEKSMKKLDQRV 1092


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -1

Query: 409 FKDWTSGISKVVHRSNKHTYNYKPI---RHELNQKITVFNTKPSETIGTNHKLTFT-FEN 242
           FKD  + I K++ +   +TY Y  +   ++E  QK+ +  TK      +N K   +  EN
Sbjct: 15  FKDEITQIEKILLKMEDNTYEYVDVFLEKYESQQKLLLKLTKAITEYLSNLKPQLSKQEN 74

Query: 241 LQIXHYET 218
           + + H ++
Sbjct: 75  IYVKHIKS 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,453
Number of Sequences: 5004
Number of extensions: 65827
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 545231778
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)