Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_F02
         (1042 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical ...    30   2.4  

>Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical
           protein T22C1.6 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 409 FKDWTSGISKVVHRSNKHTYNYKPIRHELNQKI---TVFNTKPSETIGTNHKLTFTFENL 239
           FKD  S ++K   +  K   +YK    E N+K+   T+ N + +E I T+ K     ENL
Sbjct: 255 FKDEISRVNKKCMQVEKEGLSYKKKSDEANKKVLVLTMTNQEYAEKIATSDKKIQMLENL 314


>AC024838-1|AAF60824.1| 1100|Caenorhabditis elegans Hypothetical
            protein Y59E9AL.4 protein.
          Length = 1100

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -2

Query: 435  LMVKSLFFLLKTGPLESAKLYTAPTSTRTIINQFDTN*TRKSLFSTQNRRRRSEQ 271
            L+V  L   LKT PL   K+Y     T +I++  +T   RKS    +NRRR++ Q
Sbjct: 998  LVVLLLQLHLKTKPLRLPKVYKIQFHTTSILSDHETR-GRKSR-KKKNRRRKNRQ 1050


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,651
Number of Sequences: 27780
Number of extensions: 382458
Number of successful extensions: 905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2762030832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)