Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_E24
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 31 0.86
AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical ... 31 0.86
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 31 1.1
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 31 1.1
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 31 1.1
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 31 1.1
U58740-2|AAD32276.1| 191|Caenorhabditis elegans Hypothetical pr... 30 2.0
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p... 30 2.6
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 29 3.5
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 29 6.0
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 29 6.0
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 28 8.0
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 8.0
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 28 8.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 8.0
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 31.5 bits (68), Expect = 0.86
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 108 YIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQ 281
Y K V C++ + + D +F KDI+ K+ HKTLE + + K +D Q
Sbjct: 572 YFKNNKPKVFLECVSRLRKTAI--DGENFVKDIQKTYKKSHKTLESDSSPVLKLEDPQ 627
>AC006834-9|AAL11490.1| 447|Caenorhabditis elegans Hypothetical
protein ZK973.11 protein.
Length = 447
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 219 KEFHKTLEQQFNSLTKSKDAQD-FSKAWKDGSESVLQ 326
+EFHKT E+ L K D + F AW DGS+ Q
Sbjct: 266 REFHKTAEEASKELRKHPDLWNRFQFAWLDGSDLASQ 302
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 110 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 172 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKK---VSSNVQETNEKLAPKIKAAYDDFAK 622
LQA VQN QE+++L+ K V+S+ E +EK+ K K Y+ K
Sbjct: 183 LQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK-KREYEQLQK 227
>U58740-2|AAD32276.1| 191|Caenorhabditis elegans Hypothetical
protein R09H3.3 protein.
Length = 191
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = +2
Query: 545 KVSSNVQETNEKLAPKIKAAYDDFAKNTQEGDQEDPGGRQRQ 670
++++ ++ETN+ + P+I+AA + QE DQ++ G+ R+
Sbjct: 103 EITNFMKETNKAIVPRIEAALQQ-NSSYQERDQQETDGKDRK 143
>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
protein R05D3.1 protein.
Length = 1053
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 162 GAMVRRDAPDFFKDIEHHTKEFH--KTLEQQFNSLTKSKDAQDFSKAWKDGSES 317
G +A ++F D++HHT F T + + +D D K W SE+
Sbjct: 519 GTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIRMAFDRDKSDERKEWIRRSEN 572
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 494 LQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 634
LQ A + VQ + K + SNV E + + I DD K ++
Sbjct: 306 LQKAEEEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEK 352
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 458 NVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEG 637
+V L EK+ + V N +E + KK V+E EK KIK YD+ + +
Sbjct: 346 SVHTTKRQLEEKI-SEVNNFKKELIEEFKKCKKGVEEEFEKKFEKIKEDYDELYEKLKR- 403
Query: 638 DQED 649
DQ D
Sbjct: 404 DQRD 407
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 458 NVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEG 637
+V L EK+ + V N +E + KK V+E EK KIK YD+ + +
Sbjct: 346 SVHTTKRQLEEKI-SEVNNFKKELIEEFKKCKKGVEEEFEKKFEKIKEDYDELYEKLKR- 403
Query: 638 DQED 649
DQ D
Sbjct: 404 DQRD 407
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 454 GGPCGAPRPCARCSASTVPKPP 389
GG CG P PC + + V PP
Sbjct: 65 GGGCGGPAPCGGAAPAYVAPPP 86
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 596 KAAYDDFAKNTQEGDQEDPGGRQRQAVSVD 685
KAAYD K+ E DQE+ RQ S+D
Sbjct: 3279 KAAYDALKKDDDEEDQEERESLLRQERSID 3308
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 467 KNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 634
+N + +K VQ + QK+ KK + NVQ+ +K A K AKN Q+
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQK 1316
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 596 KAAYDDFAKNTQEGDQEDPGGRQRQAVSVD 685
KAAYD K+ E DQE+ RQ S+D
Sbjct: 3279 KAAYDALKKDDDEEDQEERESLLRQERSID 3308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,554
Number of Sequences: 27780
Number of extensions: 207414
Number of successful extensions: 1105
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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