Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E21
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502...    33   0.30 
08_02_1129 - 24513568-24514296,24515380-24515817                       33   0.40 
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152...    31   0.93 
04_04_0347 + 24564589-24565296                                         29   3.8  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   6.6  
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258     28   8.7  
01_06_0570 - 30317848-30318240                                         28   8.7  

>01_01_0659 -
           5021159-5021266,5021364-5021494,5021619-5021785,
           5021950-5022065,5022226-5022381,5022570-5022678,
           5023153-5023262,5023807-5023992,5024077-5024667
          Length = 557

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 289 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 387
           K   ++ E +VEGD Y + +H PG+  K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248


>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 685 FAISLS-SGLSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 548
           FA S+S S +SP   QR A CSRW  PS   L +  +   A+QL  C
Sbjct: 253 FAASVSASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299


>11_06_0645 -
           25814302-25814759,25814853-25815005,25815032-25815214,
           25815342-25815531,25815624-25815784,25816136-25816623,
           25817035-25817075
          Length = 557

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +1

Query: 127 PRHSTTMARHIGRITITTP--FSPYVRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPS 300
           P+ S+T    +G   I  P  F P   +  L  H  WS L+  + H+        L F  
Sbjct: 303 PQISSTYDGSVGLSDIGVPYRFQPDTLDKNLMHHGSWSFLS--IAHI--------LCF-- 350

Query: 301 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 459
           I ++G++EG +  I  H+P  E  D+ V + +   +   +S   H  K  N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 84  MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 185
           M  L+   LLAA SAA   +H  ++ PY HH+ P+
Sbjct: 5   MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +1

Query: 196  VRESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQIS 345
            +++++L+       LA+E+Q  D ++ EL  K  S  +  R+E  + ++S
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEALESELS 1347


>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
          Length = 874

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 532 KQPEDSKRPVAEPTETTPTNVSREEMEFTTESNVRD 639
           +QP  SKRP AE T TT +   ++ +E   ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730


>01_06_0570 - 30317848-30318240
          Length = 130

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 478 GSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFT---TESNVRDVDV 648
           G  +YE DVL   +P  Q  P D   P A  T T PT   R + + T   + ++ R VD+
Sbjct: 5   GEELYESDVL---WPDHQS-PHDVVPPTATATATAPTPARRGQQQITRHCSTASSRPVDI 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,547,817
Number of Sequences: 37544
Number of extensions: 475592
Number of successful extensions: 1523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)