Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E19
         (880 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    29   0.19 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    26   1.3  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   7.0  

>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 324 TPPXXXXXXXXXXLDRSLSLTVDDNSVVSRVLTKGLPQGSV 202
           TPP          + R+L    D+  VVSR ++ G+PQGSV
Sbjct: 587 TPPYFQALLRNYFVGRTLHYDTDEK-VVSRTVSAGVPQGSV 626


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 282 DRSLSLTVDDNSVVSRVLTKGLPQGSV 202
           DR L    DD  V +R L+ G+PQGS+
Sbjct: 626 DRQLVFDTDDGPV-TRNLSTGVPQGSI 651


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 282 DRSLSLTVDDNSVVSRVLTKGLPQGSV 202
           DR L     +  VV R +T G+PQGS+
Sbjct: 606 DRELVYETSEGPVV-RSVTAGVPQGSI 631


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,380
Number of Sequences: 2352
Number of extensions: 11254
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94266828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)