Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_E18
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   5.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 785 HICIMPLCLQPLSGTDQDEALLHSPELELGISFDTXVRGAAPGIPYPGCAV-LTSCVHPS 609
           H  I+ L L  L+ T  +E  L+S + +  ++ D  +        Y  C +   SC+ P 
Sbjct: 3   HNYIVILILSLLTWTYAEE--LYSDKYDY-VNIDEILANDRLRNQYYDCFIDAGSCLTPD 59

Query: 608 AIFLKPNSRYVFGDVLKSCDRV 543
           ++F K +    F    K C  +
Sbjct: 60  SVFFKSHITEAFQTQCKKCTEI 81


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = -2

Query: 785 HICIMPLCLQPLSGTDQDEALLHSPELELGISFDTXVRGAAPGIPYPGCAV-LTSCVHPS 609
           H  I+ L L  L+ T  +E  L+S + +  ++ D  +        Y  C +   SC+ P 
Sbjct: 3   HNYIVILILSLLTWTYAEE--LYSDKYDY-VNIDEILANDRLRNQYYDCFIDAGSCLTPD 59

Query: 608 AIFLKPNSRYVFGDVLKSCDRV 543
           ++F K +    F    K C  +
Sbjct: 60  SVFFKSHITEAFQTQCKKCTEI 81


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 553  QLLRTSPKTYLELGFRKMALGCTQEVRTAQPGYGIPGAAPRTXVSKDIP 699
            ++ +TS  T +  G RK      Q +   + G G+P         +D+P
Sbjct: 1166 EVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEEDVP 1214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 553  QLLRTSPKTYLELGFRKMALGCTQEVRTAQPGYGIPGAAPRTXVSKDIP 699
            ++ +TS  T +  G RK      Q +   + G G+P         +D+P
Sbjct: 1162 EVRKTSALTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEEDVP 1210


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 465 EISPTSMVAAAGFQHIRLYDLSS 533
           ++SP ++   +GF HI +  +SS
Sbjct: 108 DLSPAAVSYTSGFYHIPVIGISS 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,074
Number of Sequences: 438
Number of extensions: 6107
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)